Variant report
| Variant | rs59939614 |
|---|---|
| Chromosome Location | chr4:79036591-79036592 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10518186 | 0.90[ASN][1000 genomes] |
| rs10518187 | 0.86[ASN][1000 genomes] |
| rs17002933 | 0.90[ASN][1000 genomes] |
| rs17002934 | 0.90[ASN][1000 genomes] |
| rs17002936 | 0.90[ASN][1000 genomes] |
| rs17002939 | 0.90[ASN][1000 genomes] |
| rs17002940 | 0.90[ASN][1000 genomes] |
| rs17002949 | 0.90[ASN][1000 genomes] |
| rs17002950 | 0.90[ASN][1000 genomes] |
| rs17002955 | 0.90[ASN][1000 genomes] |
| rs17002961 | 0.84[ASN][1000 genomes] |
| rs17002976 | 0.80[ASN][1000 genomes] |
| rs1996390 | 0.90[ASN][1000 genomes] |
| rs4552489 | 0.90[ASN][1000 genomes] |
| rs4631075 | 0.90[ASN][1000 genomes] |
| rs4640694 | 0.90[ASN][1000 genomes] |
| rs56304889 | 0.90[ASN][1000 genomes] |
| rs56350977 | 0.90[ASN][1000 genomes] |
| rs56905033 | 0.90[ASN][1000 genomes] |
| rs57165692 | 0.90[ASN][1000 genomes] |
| rs57539827 | 0.90[ASN][1000 genomes] |
| rs57619651 | 0.90[ASN][1000 genomes] |
| rs57747683 | 0.90[ASN][1000 genomes] |
| rs58069750 | 0.93[ASN][1000 genomes] |
| rs58739071 | 0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs58740255 | 0.90[ASN][1000 genomes] |
| rs58858744 | 0.90[ASN][1000 genomes] |
| rs59086902 | 0.90[ASN][1000 genomes] |
| rs59584338 | 0.90[ASN][1000 genomes] |
| rs60366235 | 0.90[ASN][1000 genomes] |
| rs72860603 | 0.90[ASN][1000 genomes] |
| rs72860604 | 0.90[ASN][1000 genomes] |
| rs72860615 | 0.90[ASN][1000 genomes] |
| rs72860619 | 0.90[ASN][1000 genomes] |
| rs72860622 | 0.90[ASN][1000 genomes] |
| rs72860623 | 0.90[ASN][1000 genomes] |
| rs72860640 | 0.90[ASN][1000 genomes] |
| rs7696002 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534024 | chr4:78785189-79437403 | ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009633 | chr4:78887573-79652236 | Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 3 | nsv520625 | chr4:79002655-79071788 | Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv525530 | chr4:79024524-79266563 | Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:79022200-79039200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr4:79027000-79039400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
