Variant report

Variant	rs577813076
Chromosome Location	chr15:62176574-62176575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904284	chr15:62123600-62243197	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv521334	chr15:62129809-62340126	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527451	chr15:62129809-62340126	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv904285	chr15:62146598-62246864	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv904286	chr15:62146598-62313373	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv904287	chr15:62146598-62338797	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv904288	chr15:62146598-62356386	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv569641	chr15:62155282-62287456	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv904289	chr15:62156690-62287456	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv516639	chr15:62175134-62340126	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv904290	chr15:62175134-62356386	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:62138800-62184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:62139200-62182200	Weak transcription	Brain Substantia Nigra	brain
3	chr15:62139800-62185200	Weak transcription	NHLF	lung
4	chr15:62140000-62184800	Weak transcription	Right Ventricle	heart
5	chr15:62140200-62180000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:62142000-62209400	Weak transcription	Colonic Mucosa	Colon
7	chr15:62142400-62253000	Weak transcription	Spleen	Spleen
8	chr15:62142600-62209200	Weak transcription	K562	blood
9	chr15:62143800-62182200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:62143800-62235600	Weak transcription	Fetal Brain Male	brain
11	chr15:62144000-62194600	Weak transcription	Fetal Lung	lung
12	chr15:62144800-62184000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:62145200-62182000	Weak transcription	NHEK	skin
14	chr15:62145800-62182000	Weak transcription	Small Intestine	intestine
15	chr15:62146800-62230000	Weak transcription	Pancreas	Pancrea
16	chr15:62147000-62181800	Weak transcription	Brain Anterior Caudate	brain
17	chr15:62147000-62184000	Weak transcription	Lung	lung
18	chr15:62147800-62184000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:62149000-62198000	Weak transcription	Fetal Kidney	kidney
20	chr15:62150000-62276200	Weak transcription	Psoas Muscle	Psoas
21	chr15:62150200-62184200	Weak transcription	Aorta	Aorta
22	chr15:62150200-62185400	Weak transcription	Fetal Heart	heart
23	chr15:62150800-62182000	Weak transcription	HSMMtube	muscle
24	chr15:62150800-62183800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:62153200-62185400	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr15:62153800-62185000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr15:62154200-62198200	Weak transcription	NH-A	brain
28	chr15:62154400-62184200	Weak transcription	Fetal Intestine Small	intestine
29	chr15:62154600-62183800	Weak transcription	Brain Angular Gyrus	brain
30	chr15:62154800-62184200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:62155000-62184600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr15:62161800-62184200	Weak transcription	Fetal Brain Female	brain
33	chr15:62162600-62195200	Weak transcription	Fetal Stomach	stomach
34	chr15:62163000-62181800	Weak transcription	A549	lung
35	chr15:62163000-62182400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr15:62163000-62184800	Weak transcription	Fetal Muscle Trunk	muscle
37	chr15:62163000-62198400	Weak transcription	Osteobl	bone
38	chr15:62163200-62180200	Weak transcription	NHDF-Ad	bronchial
39	chr15:62163400-62184000	Weak transcription	Fetal Muscle Leg	muscle
40	chr15:62163600-62184800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:62163800-62181600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:62163800-62181800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr15:62163800-62184200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr15:62163800-62185400	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr15:62164000-62179000	Weak transcription	Hela-S3	cervix
46	chr15:62165400-62179000	Weak transcription	HSMM	muscle
47	chr15:62165400-62185000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:62165600-62180000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:62165600-62185400	Weak transcription	Gastric	stomach
50	chr15:62165600-62198400	Weak transcription	Thymus	Thymus

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