Variant report

Variant	rs57787605
Chromosome Location	chr5:118059388-118059389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17144458	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55872016	1.00[AMR][1000 genomes]
rs57452599	1.00[AMR][1000 genomes]
rs59580205	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59750859	1.00[AMR][1000 genomes]
rs59871274	1.00[AMR][1000 genomes]
rs73238297	1.00[AMR][1000 genomes]
rs73238299	1.00[AMR][1000 genomes]
rs73242001	1.00[AMR][1000 genomes]
rs73244231	1.00[AMR][1000 genomes]
rs73244298	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246317	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246320	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73790423	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv599561	chr5:118043996-118073157	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a
4	nsv1034487	chr5:118047803-118085925	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118058400-118062400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:118058600-118059400	Enhancers	HSMMtube	muscle
3	chr5:118059200-118059600	Enhancers	GM12878-XiMat	blood
4	chr5:118059200-118062800	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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