Variant report

Variant	rs73246320
Chromosome Location	chr5:118037637-118037638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17144458	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55872016	1.00[AMR][1000 genomes]
rs57452599	1.00[AMR][1000 genomes]
rs57787605	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59580205	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59750859	1.00[AMR][1000 genomes]
rs59871274	1.00[AMR][1000 genomes]
rs73238297	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73238299	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73242001	1.00[AMR][1000 genomes]
rs73244231	1.00[AMR][1000 genomes]
rs73244298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73790423	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599541	chr5:117869174-118049776	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1032241	chr5:117900051-118157400	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv882767	chr5:117931730-118385691	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118036200-118038200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:118036800-118038800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr5:118037200-118040000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links