Variant report

Variant	rs57791741
Chromosome Location	chr4:8502445-8502446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:133030195..133031800-chr4:8501349..8502849,2	MCF-7	breast:
2	chr4:8500815..8505571-chr4:8524859..8530536,4	MCF-7	breast:
3	chr4:8501425..8503291-chr4:8548491..8551263,2	MCF-7	breast:
4	chr4:8500499..8503047-chr4:8505239..8508077,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56727681	0.84[AFR][1000 genomes]
rs67332046	0.85[AFR][1000 genomes]
rs67496006	0.85[AFR][1000 genomes]
rs6857320	0.81[AFR][1000 genomes]
rs73076290	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73076294	0.88[AFR][1000 genomes]
rs73078209	0.81[AFR][1000 genomes]
rs73078210	0.81[AFR][1000 genomes]
rs73089515	0.88[AFR][1000 genomes]
rs73089517	0.93[AFR][1000 genomes]
rs73091445	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8491000-8505200	Weak transcription	Fetal Brain Female	brain
2	chr4:8497000-8504200	Weak transcription	Right Atrium	heart
3	chr4:8501600-8502600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:8501600-8502600	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:8501600-8502800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:8501600-8502800	Weak transcription	Placenta	Placenta
7	chr4:8501600-8503000	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:8501600-8503600	Weak transcription	Adipose Nuclei	Adipose
9	chr4:8501600-8504000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:8501600-8504000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr4:8501600-8504000	Weak transcription	Fetal Heart	heart
12	chr4:8501600-8504200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:8501600-8504200	Weak transcription	Esophagus	oesophagus
14	chr4:8501600-8504200	Weak transcription	Pancreas	Pancrea
15	chr4:8501600-8504400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:8501600-8504400	Weak transcription	Lung	lung
17	chr4:8501600-8504600	Weak transcription	Brain Anterior Caudate	brain
18	chr4:8501600-8504600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:8501600-8505200	Weak transcription	Brain Substantia Nigra	brain
20	chr4:8501600-8505600	Weak transcription	Gastric	stomach
21	chr4:8501600-8505800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:8501600-8505800	Weak transcription	Colonic Mucosa	Colon
23	chr4:8501600-8505800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr4:8501600-8506000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:8501600-8507000	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr4:8501600-8507000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:8501600-8507400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:8501600-8507400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr4:8501600-8507600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr4:8501600-8507600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr4:8501600-8507600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr4:8501600-8507800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr4:8501600-8507800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:8501600-8507800	Weak transcription	Brain Angular Gyrus	brain
35	chr4:8501800-8502600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:8501800-8510600	Enhancers	Ovary	ovary

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