Variant report

Variant	rs73076294
Chromosome Location	chr4:8511780-8511781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56727681	0.81[AFR][1000 genomes]
rs57791741	0.88[AFR][1000 genomes]
rs67332046	0.88[AFR][1000 genomes]
rs67496006	0.88[AFR][1000 genomes]
rs6857320	0.83[AFR][1000 genomes]
rs73076290	0.95[AFR][1000 genomes]
rs73076295	0.86[AFR][1000 genomes]
rs73076299	0.82[AFR][1000 genomes]
rs73078209	0.83[AFR][1000 genomes]
rs73078210	0.83[AFR][1000 genomes]
rs73089515	0.86[AFR][1000 genomes]
rs73089517	0.90[AFR][1000 genomes]
rs73091445	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8502800-8512800	Enhancers	Placenta	Placenta
2	chr4:8507200-8512000	Weak transcription	Gastric	stomach
3	chr4:8509000-8519200	Weak transcription	Brain Germinal Matrix	brain
4	chr4:8509200-8513200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:8509400-8513200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:8509400-8514000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:8509400-8517200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:8509600-8514200	Weak transcription	HSMMtube	muscle
9	chr4:8509600-8515200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:8509600-8515600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:8510000-8515600	Weak transcription	NHDF-Ad	bronchial
12	chr4:8510400-8512200	ZNF genes & repeats	Spleen	Spleen
13	chr4:8511600-8511800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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