Variant report

Variant	rs577942690
Chromosome Location	chr9:100862507-100862508
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100684128..100686572-chr9:100861650..100863444,2	K562	blood:
2	chr9:100858708..100861627-chr9:100861648..100863594,2	MCF-7	breast:
3	chr9:100817590..100820574-chr9:100860322..100862706,3	K562	blood:
4	chr9:100855944..100858108-chr9:100861699..100863538,2	MCF-7	breast:
5	chr9:100860467..100862654-chr9:100943409..100946106,2	K562	blood:
6	chr9:100862346..100865171-chr9:100880500..100883017,2	K562	blood:
7	chr9:100860198..100865318-chr9:100878989..100883996,6	MCF-7	breast:
8	chr9:100861454..100863501-chr9:100865367..100867490,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136932	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000106785	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv614935	chr9:100861387-100876284	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100846000-100862600	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr9:100847400-100869400	Weak transcription	A549	lung
3	chr9:100847600-100867000	Weak transcription	Hela-S3	cervix
4	chr9:100850400-100868000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:100850400-100880400	Weak transcription	HSMM	muscle
6	chr9:100850600-100863000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr9:100850600-100864400	Weak transcription	Brain Germinal Matrix	brain
8	chr9:100850600-100875400	Weak transcription	NHLF	lung
9	chr9:100850600-100880600	Weak transcription	Fetal Lung	lung
10	chr9:100851000-100862800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr9:100854600-100870800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:100854800-100863800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr9:100854800-100870800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:100855000-100864400	Weak transcription	Brain Angular Gyrus	brain
15	chr9:100855000-100866800	Weak transcription	Placenta	Placenta
16	chr9:100855000-100868200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr9:100855200-100864400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:100855200-100864400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr9:100855600-100864000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr9:100855600-100864400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr9:100857800-100869400	Weak transcription	Left Ventricle	heart
22	chr9:100858200-100868000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr9:100858200-100869000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr9:100858400-100872000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:100858600-100866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:100858600-100880400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr9:100858600-100880400	Weak transcription	Brain Anterior Caudate	brain
28	chr9:100858800-100864400	Weak transcription	Brain Hippocampus Middle	brain
29	chr9:100858800-100867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:100859000-100867000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr9:100859200-100880600	Weak transcription	Gastric	stomach
32	chr9:100859400-100864600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:100859600-100864400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr9:100860000-100869000	Strong transcription	Fetal Intestine Small	intestine
35	chr9:100860200-100862600	Strong transcription	Liver	Liver
36	chr9:100860200-100880800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr9:100860600-100864600	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr9:100860600-100868000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:100861200-100862600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
40	chr9:100861400-100863800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr9:100861400-100868000	Enhancers	Primary hematopoietic stem cells	blood
42	chr9:100861400-100871800	Enhancers	Primary B cells from peripheral blood	blood
43	chr9:100861400-100880600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:100861600-100862600	Genic enhancers	Rectal Mucosa Donor 31	rectum
45	chr9:100861800-100862600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr9:100861800-100862600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
47	chr9:100861800-100862600	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:100861800-100864200	Weak transcription	Brain Substantia Nigra	brain
49	chr9:100862000-100862600	Genic enhancers	Rectal Mucosa Donor 29	rectum
50	chr9:100862000-100862600	Genic enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links