Variant report

Variant	rs57794423
Chromosome Location	chr6:28638728-28638729
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28636854..28639697-chr6:28643402..28645918,2	K562	blood:
2	chr6:28633014..28636494-chr6:28636598..28640910,4	K562	blood:
3	chr6:28579737..28581726-chr6:28636928..28639607,2	K562	blood:
4	chr6:28638654..28641368-chr6:28714122..28716293,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs28382594	1.00[ASN][1000 genomes]
rs28382596	1.00[ASN][1000 genomes]
rs28382601	1.00[ASN][1000 genomes]
rs34019940	1.00[ASN][1000 genomes]
rs34192187	1.00[ASN][1000 genomes]
rs34349364	1.00[ASN][1000 genomes]
rs34525298	1.00[ASN][1000 genomes]
rs34647572	1.00[ASN][1000 genomes]
rs34702676	1.00[ASN][1000 genomes]
rs34718552	1.00[ASN][1000 genomes]
rs34825130	1.00[ASN][1000 genomes]
rs35552803	1.00[ASN][1000 genomes]
rs35651056	1.00[ASN][1000 genomes]
rs55676262	1.00[ASN][1000 genomes]
rs56311421	1.00[ASN][1000 genomes]
rs56324482	1.00[ASN][1000 genomes]
rs56324542	1.00[ASN][1000 genomes]
rs56388047	1.00[ASN][1000 genomes]
rs56877891	1.00[ASN][1000 genomes]
rs56918790	1.00[ASN][1000 genomes]
rs56979741	1.00[ASN][1000 genomes]
rs57608370	1.00[ASN][1000 genomes]
rs58294982	1.00[ASN][1000 genomes]
rs58730024	1.00[ASN][1000 genomes]
rs58824507	1.00[ASN][1000 genomes]
rs59222760	1.00[ASN][1000 genomes]
rs59222792	1.00[ASN][1000 genomes]
rs59411896	1.00[ASN][1000 genomes]
rs59425370	1.00[ASN][1000 genomes]
rs59440428	1.00[ASN][1000 genomes]
rs59498371	1.00[ASN][1000 genomes]
rs59850749	1.00[ASN][1000 genomes]
rs61192640	1.00[ASN][1000 genomes]
rs61306760	1.00[ASN][1000 genomes]
rs73391140	1.00[ASN][1000 genomes]
rs73740739	1.00[ASN][1000 genomes]
rs73740743	1.00[ASN][1000 genomes]
rs73740955	1.00[ASN][1000 genomes]
rs73740956	1.00[ASN][1000 genomes]
rs73740957	1.00[ASN][1000 genomes]
rs73740958	1.00[ASN][1000 genomes]
rs73740959	1.00[ASN][1000 genomes]
rs73740960	1.00[ASN][1000 genomes]
rs73740961	1.00[ASN][1000 genomes]
rs73740962	1.00[ASN][1000 genomes]
rs73740963	1.00[ASN][1000 genomes]
rs73740964	1.00[ASN][1000 genomes]
rs73740965	1.00[ASN][1000 genomes]
rs73740966	1.00[ASN][1000 genomes]
rs73740967	1.00[ASN][1000 genomes]
rs73740969	1.00[ASN][1000 genomes]
rs73740970	1.00[ASN][1000 genomes]
rs73742925	1.00[ASN][1000 genomes]
rs73742933	1.00[ASN][1000 genomes]
rs9468422	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1031671	chr6:28575172-28678126	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28627600-28641400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:28634800-28643000	Weak transcription	K562	blood

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