Variant report

Variant	rs58294982
Chromosome Location	chr6:28454989-28454990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28364266..28370257-chr6:28453674..28463075,14	K562	blood:

Variant related genes	Relation type
ENSG00000158691	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs28382594	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28382596	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28382601	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34019940	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34192187	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34349364	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34525298	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34647572	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34702676	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34718552	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34825130	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35552803	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35651056	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55676262	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56311421	1.00[ASN][1000 genomes]
rs56324482	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56324542	1.00[ASN][1000 genomes]
rs56388047	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56877891	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56918790	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56979741	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57608370	1.00[ASN][1000 genomes]
rs57794423	1.00[ASN][1000 genomes]
rs58730024	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58824507	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59222760	1.00[ASN][1000 genomes]
rs59222792	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59411896	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59425370	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59440428	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59498371	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59850749	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61192640	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61306760	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73391140	1.00[ASN][1000 genomes]
rs73740739	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740743	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740955	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740956	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740957	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740958	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740959	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740960	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740961	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740962	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740963	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740964	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740965	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740966	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740967	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740969	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73740970	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73742925	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73742933	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28443200-28456600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:28451800-28456800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28453600-28456600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:28454400-28455200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:28454800-28456000	Flanking Active TSS	K562	blood

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