Variant report

Variant	rs57800820
Chromosome Location	chr14:72998877-72998878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10151504	0.80[ASN][1000 genomes]
rs59781747	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61175412	0.80[ASN][1000 genomes]
rs61696507	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv1843592	chr14:72967991-73007547	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72984400-73011000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:72991400-73001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:72992200-73001400	Weak transcription	Spleen	Spleen
4	chr14:72995800-73000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:72996400-72999200	Weak transcription	Ovary	ovary
6	chr14:72996600-73003200	Weak transcription	Fetal Stomach	stomach
7	chr14:72997400-72999800	Enhancers	Primary B cells from peripheral blood	blood
8	chr14:72997400-73003600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:72997600-73000000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr14:72997600-73003400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr14:72997600-73003800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr14:72997800-73000000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:72997800-73003200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr14:72997800-73004000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:72998000-72999200	Enhancers	Fetal Thymus	thymus
16	chr14:72998000-73000000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr14:72998200-72999400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr14:72998200-72999600	Enhancers	Primary T cells from cord blood	blood
19	chr14:72998200-73000000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr14:72998200-73003800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr14:72998400-72999000	ZNF genes & repeats	GM12878-XiMat	blood
22	chr14:72998600-73000000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:72998600-73000200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:72998800-72999200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr14:72998800-73001200	ZNF genes & repeats	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links