Variant report

Variant	rs10151504
Chromosome Location	chr14:73010363-73010364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17117195	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17117221	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[CHD][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17117326	1.00[MEX][hapmap]
rs17117590	1.00[CEU][hapmap]
rs4903030	1.00[JPT][hapmap]
rs56771173	1.00[EUR][1000 genomes]
rs57401932	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57800820	0.80[ASN][1000 genomes]
rs58361653	1.00[EUR][1000 genomes]
rs59781747	0.80[ASN][1000 genomes]
rs60642139	1.00[EUR][1000 genomes]
rs61175412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61696507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7146557	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72984400-73011000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:73003000-73010800	Weak transcription	Fetal Brain Female	brain
3	chr14:73003400-73011000	Weak transcription	Spleen	Spleen
4	chr14:73007200-73011000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr14:73007200-73011200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:73007600-73010800	Weak transcription	Ovary	ovary
7	chr14:73007600-73011000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:73007800-73011200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:73009000-73016400	Enhancers	HSMMtube	muscle
10	chr14:73009400-73015600	Enhancers	HSMM	muscle
11	chr14:73009600-73010600	Enhancers	Primary hematopoietic stem cells	blood
12	chr14:73009600-73010800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr14:73009600-73011000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
14	chr14:73009600-73011200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr14:73009600-73011600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr14:73009600-73016800	Enhancers	Fetal Muscle Leg	muscle
17	chr14:73009800-73010400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:73009800-73010400	Enhancers	Fetal Thymus	thymus
19	chr14:73009800-73010600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:73009800-73011200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr14:73009800-73012400	Enhancers	Fetal Stomach	stomach
22	chr14:73009800-73013800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:73009800-73014800	Enhancers	Fetal Muscle Trunk	muscle
24	chr14:73009800-73015000	Enhancers	Primary B cells from peripheral blood	blood
25	chr14:73010000-73010400	Enhancers	Primary T cells from cord blood	blood
26	chr14:73010000-73010400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr14:73010000-73010400	Enhancers	Fetal Kidney	kidney
28	chr14:73010000-73010600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:73010000-73010800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr14:73010000-73012800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:73010000-73012800	Enhancers	Fetal Lung	lung
32	chr14:73010000-73013600	Enhancers	Liver	Liver
33	chr14:73010000-73015400	Enhancers	Fetal Brain Male	brain
34	chr14:73010200-73010400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr14:73010200-73010400	Enhancers	Fetal Intestine Large	intestine
36	chr14:73010200-73010600	Weak transcription	Right Ventricle	heart
37	chr14:73010200-73010800	Weak transcription	Brain Hippocampus Middle	brain
38	chr14:73010200-73011000	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr14:73010200-73011200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:73010200-73011200	Weak transcription	Brain Substantia Nigra	brain
41	chr14:73010200-73011200	Weak transcription	Left Ventricle	heart
42	chr14:73010200-73011400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr14:73010200-73011800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:73010200-73011800	Enhancers	Fetal Heart	heart
45	chr14:73010200-73012400	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr14:73010200-73012400	Enhancers	Placenta	Placenta
47	chr14:73010200-73014400	Enhancers	Primary B cells from cord blood	blood

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