Variant report

Variant	rs57401932
Chromosome Location	chr14:73001336-73001337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:73001208..73003148-chr14:73004937..73007563,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182732	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10151504	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17117195	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17117221	1.00[EUR][1000 genomes]
rs56771173	1.00[EUR][1000 genomes]
rs58361653	1.00[EUR][1000 genomes]
rs60642139	1.00[EUR][1000 genomes]
rs61175412	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61696507	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv1843592	chr14:72967991-73007547	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72984400-73011000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:72991400-73001600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr14:72992200-73001400	Weak transcription	Spleen	Spleen
4	chr14:72996600-73003200	Weak transcription	Fetal Stomach	stomach
5	chr14:72997400-73003600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr14:72997600-73003400	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr14:72997600-73003800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr14:72997800-73003200	Enhancers	Primary T cells fromperipheralblood	blood
9	chr14:72997800-73004000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:72998200-73003800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr14:72999200-73001600	Weak transcription	Fetal Thymus	thymus
12	chr14:72999400-73009600	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr14:73000200-73001600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr14:73000200-73010000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:73000200-73010000	Weak transcription	Right Ventricle	heart
16	chr14:73000600-73004200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:73000800-73007800	Enhancers	Primary B cells from peripheral blood	blood
18	chr14:73001000-73003600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:73001000-73003600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr14:73001000-73003800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr14:73001200-73001400	Weak transcription	Primary B cells from cord blood	blood
22	chr14:73001200-73002000	ZNF genes & repeats	GM12878-XiMat	blood
23	chr14:73001200-73003000	Enhancers	Primary T cells from cord blood	blood
24	chr14:73001200-73003600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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