Variant report

Variant	rs56771173
Chromosome Location	chr14:72990153-72990154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:72985322..72986876-chr14:72989675..72992463,2	MCF-7	breast:
2	chr14:72985021..72986581-chr14:72988100..72990436,2	K562	blood:
3	chr14:72989880..72992658-chr14:73361880..73363870,2	MCF-7	breast:
4	chr14:72970459..72972263-chr14:72988772..72991077,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10151504	1.00[EUR][1000 genomes]
rs17117195	1.00[EUR][1000 genomes]
rs17117221	1.00[EUR][1000 genomes]
rs4441203	0.94[ASN][1000 genomes]
rs57401932	1.00[EUR][1000 genomes]
rs58361653	1.00[EUR][1000 genomes]
rs59245863	0.88[ASN][1000 genomes]
rs60642139	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61175412	1.00[EUR][1000 genomes]
rs61192266	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61696507	1.00[EUR][1000 genomes]
rs74063449	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	esv1843592	chr14:72967991-73007547	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72979400-72995400	Weak transcription	Left Ventricle	heart
2	chr14:72983600-72995000	Weak transcription	Colonic Mucosa	Colon
3	chr14:72984000-72994800	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72984200-72990400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:72984200-72994400	Weak transcription	Fetal Stomach	stomach
6	chr14:72984400-73011000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:72984800-72995400	Weak transcription	Osteobl	bone
8	chr14:72986400-72995000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:72986600-72990600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr14:72986600-72990600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:72986600-72990800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr14:72986600-72990800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr14:72986600-72991000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:72986800-72990200	Weak transcription	Primary T cells from cord blood	blood
15	chr14:72986800-72990800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:72986800-72996200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:72987200-72990600	Weak transcription	Fetal Thymus	thymus
18	chr14:72987400-72990400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr14:72988200-72990800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr14:72988800-72990600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr14:72988800-72991200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:72988800-72992600	Enhancers	Fetal Lung	lung
23	chr14:72989000-72993400	Weak transcription	GM12878-XiMat	blood
24	chr14:72989200-72995800	Enhancers	Primary B cells from peripheral blood	blood
25	chr14:72989400-72991000	Enhancers	Liver	Liver
26	chr14:72989400-72994600	Enhancers	HSMMtube	muscle
27	chr14:72989600-72990400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
28	chr14:72989600-72990800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr14:72989600-72991200	Enhancers	Primary B cells from cord blood	blood
30	chr14:72989600-72991600	Enhancers	Ovary	ovary
31	chr14:72989600-72992600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr14:72989600-72995200	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr14:72989800-72990200	Enhancers	Fetal Muscle Trunk	muscle
34	chr14:72989800-72991200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:72989800-72992800	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr14:72989800-72993600	Enhancers	Adipose Nuclei	Adipose
37	chr14:72989800-72996000	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr14:72989800-72997600	Enhancers	HSMM	muscle
39	chr14:72990000-72990200	Enhancers	NHLF	lung
40	chr14:72990000-72990400	Enhancers	Spleen	Spleen
41	chr14:72990000-72990600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:72990000-72993600	Weak transcription	HMEC	breast
43	chr14:72990000-72994000	Enhancers	Muscle Satellite Cultured Cells	--

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