Variant report

Variant	rs57808317
Chromosome Location	chr11:24776992-24776993
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10450584	0.97[ASN][1000 genomes]
rs10450585	0.96[ASN][1000 genomes]
rs10834475	0.96[ASN][1000 genomes]
rs10834476	0.93[ASN][1000 genomes]
rs10834477	0.99[ASN][1000 genomes]
rs11028141	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11028142	0.92[ASN][1000 genomes]
rs11028144	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11028147	0.94[ASN][1000 genomes]
rs12224130	0.94[ASN][1000 genomes]
rs56350467	0.94[ASN][1000 genomes]
rs60593394	0.95[ASN][1000 genomes]
rs7123025	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv897094	chr11:24761831-24793160	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv1044583	chr11:24772936-24831557	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv553822	chr11:24774037-24786653	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv897095	chr11:24774864-24793160	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24769000-24779000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:24776200-24777000	Enhancers	NHEK	skin
3	chr11:24776200-24777400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:24776200-24777600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:24776200-24778000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr11:24776400-24778000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:24776600-24777400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:24776800-24777400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:24776800-24777800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:24776800-24777800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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