Variant report
| Variant | rs57815345 |
|---|---|
| Chromosome Location | chr6:126617326-126617327 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:126617266..126618861-chr6:126620924..126623435,2 | K562 | blood: | |
| 2 | chr6:126396620..126398703-chr6:126615535..126618232,2 | K562 | blood: | |
| 3 | chr6:126617266..126620178-chr6:126620924..126623435,3 | K562 | blood: | |
| 4 | chr6:126616885..126618501-chr6:126657011..126658756,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs55748258 | 1.00[AMR][1000 genomes] |
| rs57495004 | 1.00[AMR][1000 genomes] |
| rs58167367 | 1.00[AMR][1000 genomes] |
| rs58940730 | 1.00[AMR][1000 genomes] |
| rs60332165 | 1.00[AMR][1000 genomes] |
| rs73771459 | 1.00[AMR][1000 genomes] |
| rs73771462 | 1.00[AMR][1000 genomes] |
| rs73771463 | 1.00[AMR][1000 genomes] |
| rs73771464 | 1.00[AMR][1000 genomes] |
| rs73771466 | 1.00[AMR][1000 genomes] |
| rs73771469 | 1.00[AMR][1000 genomes] |
| rs73771471 | 1.00[AMR][1000 genomes] |
| rs73771474 | 1.00[AMR][1000 genomes] |
| rs73771477 | 1.00[AMR][1000 genomes] |
| rs73771482 | 1.00[AMR][1000 genomes] |
| rs73771483 | 1.00[AMR][1000 genomes] |
| rs73771484 | 1.00[AMR][1000 genomes] |
| rs73771486 | 1.00[AMR][1000 genomes] |
| rs73771488 | 1.00[AMR][1000 genomes] |
| rs73771489 | 1.00[AMR][1000 genomes] |
| rs73771490 | 1.00[AMR][1000 genomes] |
| rs73773372 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015834 | chr6:126376458-126634409 | Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:126616000-126620000 | Weak transcription | HSMM | muscle |
