Variant report

Variant	rs58940730
Chromosome Location	chr6:126862872-126862873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs55638175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55693422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55748258	1.00[AMR][1000 genomes]
rs55866117	1.00[AMR][1000 genomes]
rs55999742	1.00[AMR][1000 genomes]
rs56949492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57495004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57768813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57815345	1.00[AMR][1000 genomes]
rs58167367	1.00[AMR][1000 genomes]
rs60332165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771459	1.00[AMR][1000 genomes]
rs73771462	1.00[AMR][1000 genomes]
rs73771463	1.00[AMR][1000 genomes]
rs73771464	1.00[AMR][1000 genomes]
rs73771466	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771469	1.00[AMR][1000 genomes]
rs73771471	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771474	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73771499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773128	1.00[AMR][1000 genomes]
rs73773129	1.00[AMR][1000 genomes]
rs73773130	1.00[AMR][1000 genomes]
rs73773131	1.00[AMR][1000 genomes]
rs73773134	1.00[AMR][1000 genomes]
rs73773136	1.00[AMR][1000 genomes]
rs73773137	1.00[AMR][1000 genomes]
rs73773138	1.00[AMR][1000 genomes]
rs73773143	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021636	chr6:126792916-127022489	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1026498	chr6:126812609-127397240	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:126860200-126864600	Enhancers	Fetal Intestine Large	intestine
2	chr6:126862600-126863600	Enhancers	Colon Smooth Muscle	Colon
3	chr6:126862600-126864000	Enhancers	Fetal Intestine Small	intestine
4	chr6:126862800-126863400	Enhancers	Duodenum Smooth Muscle	Duodenum
5	chr6:126862800-126863400	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:126862800-126863600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:126862800-126863600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:126862800-126864000	Enhancers	Hela-S3	cervix

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