Variant report

Variant	rs57816248
Chromosome Location	chr15:92810043-92810044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1871436	0.87[AFR][1000 genomes]
rs58194078	0.83[AMR][1000 genomes]
rs58654022	0.81[AFR][1000 genomes]
rs59058379	0.83[AMR][1000 genomes]
rs60165283	0.83[AMR][1000 genomes]
rs7169408	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73533682	1.00[AMR][1000 genomes]
rs73535760	0.83[AMR][1000 genomes]
rs73535773	0.83[AMR][1000 genomes]
rs73535776	0.83[AMR][1000 genomes]
rs73544560	0.81[AFR][1000 genomes]
rs74028881	0.81[AFR][1000 genomes]
rs74030508	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8023418	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038668	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1049561	chr15:92758434-93097965	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92809200-92811800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:92809400-92812200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:92809800-92811000	Enhancers	Fetal Heart	heart
4	chr15:92810000-92811000	Enhancers	Fetal Brain Male	brain
5	chr15:92810000-92812200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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