Variant report

Variant	rs58654022
Chromosome Location	chr15:92727736-92727737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1871436	0.84[AFR][1000 genomes]
rs57816248	0.81[AFR][1000 genomes]
rs58004056	1.00[AMR][1000 genomes]
rs60202486	0.81[AFR][1000 genomes]
rs7162667	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73544568	0.87[AFR][1000 genomes]
rs74028881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030651	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8038668	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037878	chr15:92713130-92739827	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92726000-92728000	Enhancers	Fetal Heart	heart
2	chr15:92726800-92728400	Enhancers	Fetal Thymus	thymus
3	chr15:92726800-92728400	Enhancers	Thymus	Thymus
4	chr15:92726800-92728800	Enhancers	HSMMtube	muscle
5	chr15:92726800-92729000	Enhancers	Fetal Muscle Leg	muscle
6	chr15:92727200-92728200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr15:92727200-92728200	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:92727200-92728400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr15:92727200-92728400	Enhancers	Left Ventricle	heart
10	chr15:92727200-92731200	Weak transcription	Psoas Muscle	Psoas
11	chr15:92727400-92727800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr15:92727400-92728200	Enhancers	Primary hematopoietic stem cells	blood
13	chr15:92727400-92728400	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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