Variant report

Variant	rs578173104
Chromosome Location	chr9:15721127-15721128
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15510294..15512690-chr9:15720146..15721868,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164985	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	esv2752286	chr9:15578017-15794897	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv892632	chr9:15590116-15869845	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv892633	chr9:15604746-15889411	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv466262	chr9:15615321-15727518	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv613657	chr9:15615321-15727518	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv613658	chr9:15636260-15727518	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv466263	chr9:15641279-15726057	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv613659	chr9:15641279-15726057	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv892634	chr9:15696501-15746168	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv32957	chr9:15720059-15737099	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:15676600-15725000	Weak transcription	Pancreas	Pancrea
2	chr9:15679800-15746800	Weak transcription	Ovary	ovary
3	chr9:15687600-15746600	Weak transcription	Aorta	Aorta
4	chr9:15690400-15721800	Weak transcription	Fetal Lung	lung
5	chr9:15699600-15728200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:15712600-15722600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:15715200-15722800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:15715200-15746200	Weak transcription	Left Ventricle	heart
9	chr9:15715600-15733800	Weak transcription	Brain Anterior Caudate	brain
10	chr9:15716000-15727800	Weak transcription	Fetal Thymus	thymus
11	chr9:15716400-15723200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:15716600-15723000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:15717400-15727600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:15718000-15749600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:15718400-15724800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr9:15718600-15746600	Weak transcription	Thymus	Thymus
17	chr9:15718800-15722600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr9:15718800-15727800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr9:15719000-15721600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:15719000-15723000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:15720400-15733400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr9:15720600-15735200	Weak transcription	Adipose Nuclei	Adipose
23	chr9:15721000-15721400	Enhancers	NHDF-Ad	bronchial

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