Variant report

Variant	rs57818448
Chromosome Location	chr5:74618553-74618554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17238477	1.00[AMR][1000 genomes]
rs59629012	1.00[AMR][1000 genomes]
rs60835393	1.00[AMR][1000 genomes]
rs73118884	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73118895	1.00[AMR][1000 genomes]
rs73118896	1.00[AMR][1000 genomes]
rs73118899	1.00[AMR][1000 genomes]
rs73120827	1.00[AMR][1000 genomes]
rs73120838	1.00[AMR][1000 genomes]
rs73120840	1.00[AMR][1000 genomes]
rs73120841	1.00[AMR][1000 genomes]
rs73120845	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74614000-74621400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:74616600-74619000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr5:74617000-74619000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:74617200-74619000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:74617200-74624000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:74617200-74626000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:74617400-74618800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:74617400-74618800	Weak transcription	NHEK	skin
9	chr5:74617400-74619000	Enhancers	A549	lung
10	chr5:74617400-74620200	Weak transcription	HepG2	liver
11	chr5:74617400-74620200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr5:74617600-74618800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:74617600-74618800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:74617600-74623400	Weak transcription	NHDF-Ad	bronchial
15	chr5:74617800-74618800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:74617800-74619000	Enhancers	Hela-S3	cervix
17	chr5:74618000-74619000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:74618000-74619000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:74618200-74618800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr5:74618400-74619200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr5:74618400-74620400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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