Variant report

Variant	rs73118899
Chromosome Location	chr5:74713668-74713669
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74712709..74715090-chr5:74716587..74719083,2	K562	blood:
2	chr5:74711691..74714209-chr5:74716587..74718777,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs17238477	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57057408	1.00[AMR][1000 genomes]
rs5744586	1.00[AMR][1000 genomes]
rs5744600	1.00[AMR][1000 genomes]
rs5744634	1.00[AMR][1000 genomes]
rs5744646	1.00[AMR][1000 genomes]
rs5744664	1.00[AMR][1000 genomes]
rs5744687	1.00[AMR][1000 genomes]
rs5744701	1.00[AMR][1000 genomes]
rs5744708	1.00[AMR][1000 genomes]
rs5744725	1.00[AMR][1000 genomes]
rs57818448	1.00[AMR][1000 genomes]
rs59629012	1.00[AMR][1000 genomes]
rs60835393	1.00[AMR][1000 genomes]
rs73118884	1.00[AMR][1000 genomes]
rs73118895	1.00[AMR][1000 genomes]
rs73118896	1.00[AMR][1000 genomes]
rs73120827	1.00[AMR][1000 genomes]
rs73120838	1.00[AMR][1000 genomes]
rs73120840	1.00[AMR][1000 genomes]
rs73120841	1.00[AMR][1000 genomes]
rs73120845	1.00[AMR][1000 genomes]
rs73122736	1.00[AMR][1000 genomes]
rs73122748	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882193	chr5:74656175-74917862	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv882194	chr5:74656175-74946455	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv882195	chr5:74678937-74896798	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv882196	chr5:74678937-74917862	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv882197	chr5:74692776-74946455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74656400-74725600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:74656800-74731400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr5:74659800-74720600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:74660000-74722800	Weak transcription	Fetal Heart	heart
5	chr5:74667000-74723200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr5:74670800-74720600	Weak transcription	Right Ventricle	heart
7	chr5:74670800-74731400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:74671000-74722800	Weak transcription	Hela-S3	cervix
9	chr5:74674400-74761400	Weak transcription	Esophagus	oesophagus
10	chr5:74675400-74720800	Weak transcription	Small Intestine	intestine
11	chr5:74676200-74721000	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:74677400-74722800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:74677600-74734200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:74677800-74721000	Weak transcription	NH-A	brain
15	chr5:74677800-74725000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr5:74677800-74731400	Weak transcription	Aorta	Aorta
17	chr5:74678000-74720600	Weak transcription	Colonic Mucosa	Colon
18	chr5:74678000-74730800	Weak transcription	Psoas Muscle	Psoas
19	chr5:74680600-74721000	Weak transcription	HMEC	breast
20	chr5:74680800-74722600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:74681000-74723200	Weak transcription	HUVEC	blood vessel
22	chr5:74681400-74718400	Weak transcription	Brain Germinal Matrix	brain
23	chr5:74681800-74720600	Weak transcription	Fetal Brain Male	brain
24	chr5:74684000-74720400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr5:74684000-74720800	Weak transcription	Thymus	Thymus
26	chr5:74684000-74731200	Weak transcription	HSMMtube	muscle
27	chr5:74695200-74718200	Weak transcription	Colon Smooth Muscle	Colon
28	chr5:74695400-74721000	Weak transcription	Brain Anterior Caudate	brain
29	chr5:74695400-74721000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:74695400-74723200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr5:74695600-74721000	Weak transcription	Brain Angular Gyrus	brain
32	chr5:74696000-74715800	Weak transcription	Ovary	ovary
33	chr5:74696200-74713800	Weak transcription	Fetal Brain Female	brain
34	chr5:74697000-74714000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr5:74697000-74720400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr5:74697200-74714000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:74697400-74714200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr5:74698000-74714000	Weak transcription	Fetal Kidney	kidney
39	chr5:74699400-74715800	Weak transcription	Primary hematopoietic stem cells	blood
40	chr5:74699600-74731200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr5:74702000-74721000	Weak transcription	A549	lung
42	chr5:74703800-74722600	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr5:74703800-74723000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr5:74704200-74722000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr5:74704200-74723200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr5:74704400-74714000	Weak transcription	Primary T cells from cord blood	blood
47	chr5:74704800-74714200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr5:74705800-74718800	Weak transcription	Left Ventricle	heart
49	chr5:74705800-74719200	Weak transcription	Lung	lung
50	chr5:74706000-74715600	Weak transcription	Fetal Muscle Leg	muscle

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