Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10468265	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13336809	0.88[EUR][1000 genomes]
rs16972808	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16973112	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16973190	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16973286	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1804984	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2052873	0.89[EUR][1000 genomes]
rs3886947	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56222754	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59364668	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61171207	0.90[EUR][1000 genomes]
rs72791971	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72791974	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72795864	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72795867	0.96[AMR][1000 genomes]
rs72795869	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72795881	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72797728	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8051439	0.90[EUR][1000 genomes]
rs8056735	0.88[EUR][1000 genomes]
rs9989376	0.81[EUR][1000 genomes]
rs9989377	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949461	chr16:71196153-71579711	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv906892	chr16:71526720-71570413	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs57821244	RP11-510M2.10	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71549200-71558400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr16:71551200-71554400	Weak transcription	Pancreas	Pancrea
3	chr16:71553400-71554000	Bivalent Enhancer	HepG2	liver
4	chr16:71553600-71555000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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