Variant report
| Variant | rs72797728 |
|---|---|
| Chromosome Location | chr16:71552789-71552790 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10468265 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs13336809 | 0.90[EUR][1000 genomes] |
| rs16972808 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs16973112 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs16973190 | 0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs16973286 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1804984 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2052873 | 0.90[EUR][1000 genomes] |
| rs3886947 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs56222754 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs57821244 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs59364668 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs61171207 | 0.91[EUR][1000 genomes] |
| rs72791971 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72791974 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72795864 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72795867 | 0.96[AMR][1000 genomes] |
| rs72795869 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72795881 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs8051439 | 0.91[EUR][1000 genomes] |
| rs8056735 | 0.90[EUR][1000 genomes] |
| rs9989376 | 0.83[EUR][1000 genomes] |
| rs9989377 | 0.91[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv906892 | chr16:71526720-71570413 | Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs72797728 | RP11-510M2.10 | cis | Skin Sun Exposed Lower leg | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71549200-71558400 | Weak transcription | ES-I3 Cell Line | embryonic stem cell |
| 2 | chr16:71551200-71554400 | Weak transcription | Pancreas | Pancrea |
