Variant report

Variant	rs578221075
Chromosome Location	chr18:9750335-9750336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9747038..9748943-chr18:9749027..9751835,2	K562	blood:
2	chr18:9740906..9742512-chr18:9748438..9750516,2	K562	blood:
3	chr18:9709717..9711927-chr18:9749957..9752685,2	K562	blood:
4	chr18:9740906..9743732-chr18:9749016..9751277,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1064807	chr18:9695356-9770358	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv9606	chr18:9743017-9755287	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	esv2757669	chr18:9743326-9753992	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv2758712	chr18:9743326-9753992	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv828177	chr18:9743875-9754292	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
10	nsv817783	chr18:9746909-9752939	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv1821203	chr18:9747676-9757934	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv1796843	chr18:9749799-9757934	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	esv1796789	chr18:9749957-9757734	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9742800-9754400	Weak transcription	Right Ventricle	heart
2	chr18:9743000-9756200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:9743400-9754800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr18:9743600-9755400	Weak transcription	Fetal Stomach	stomach
5	chr18:9744000-9750800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:9744000-9754800	Weak transcription	Aorta	Aorta
7	chr18:9744000-9755400	Weak transcription	Lung	lung
8	chr18:9744000-9755600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:9744000-9757600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr18:9744200-9754800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr18:9744400-9753200	Weak transcription	NHEK	skin
12	chr18:9744400-9753400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr18:9744400-9753600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:9744400-9753600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr18:9744400-9755200	Weak transcription	K562	blood
16	chr18:9744400-9755400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr18:9744400-9757000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr18:9744400-9757000	Weak transcription	HSMMtube	muscle
19	chr18:9744400-9757200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr18:9744800-9753600	Weak transcription	A549	lung
21	chr18:9747400-9750800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr18:9747800-9755400	Weak transcription	Colon Smooth Muscle	Colon
23	chr18:9748200-9759600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr18:9749000-9755000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr18:9749200-9750800	Enhancers	Brain Cingulate Gyrus	brain
26	chr18:9749200-9751000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr18:9749200-9752400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr18:9749400-9751400	Enhancers	Primary B cells from cord blood	blood
29	chr18:9749400-9751800	Genic enhancers	Hela-S3	cervix
30	chr18:9749600-9750400	Enhancers	Brain Hippocampus Middle	brain
31	chr18:9749800-9750400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr18:9749800-9750600	Flanking Active TSS	Brain Substantia Nigra	brain
33	chr18:9749800-9750800	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr18:9749800-9751000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr18:9749800-9751800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr18:9749800-9752200	Enhancers	Primary hematopoietic stem cells	blood
37	chr18:9749800-9752200	Enhancers	Fetal Muscle Leg	muscle
38	chr18:9749800-9752400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr18:9750000-9750400	Enhancers	NH-A	brain
40	chr18:9750000-9750600	Enhancers	Adipose Nuclei	Adipose
41	chr18:9750000-9750600	Enhancers	Spleen	Spleen
42	chr18:9750000-9750600	Enhancers	Osteobl	bone
43	chr18:9750000-9751000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr18:9750000-9752000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr18:9750200-9750400	Enhancers	Stomach Smooth Muscle	stomach
46	chr18:9750200-9751000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr18:9750200-9751000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr18:9750200-9751400	Weak transcription	Brain Anterior Caudate	brain
49	chr18:9750200-9752200	Enhancers	Ovary	ovary
50	chr18:9750200-9752600	Enhancers	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links