Variant report

Variant	rs57823850
Chromosome Location	chr3:141518889-141518890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16851783	0.89[AMR][1000 genomes]
rs16851813	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851836	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16851899	0.90[AMR][1000 genomes]
rs16851927	0.90[AMR][1000 genomes]
rs59954106	0.90[AMR][1000 genomes]
rs61352893	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141516800-141519200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr3:141516800-141523400	Weak transcription	Fetal Brain Male	brain
3	chr3:141517000-141519000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:141517000-141519200	Enhancers	Primary hematopoietic stem cells	blood
5	chr3:141517000-141523400	Weak transcription	Gastric	stomach
6	chr3:141517200-141519000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr3:141517200-141523400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:141517600-141519000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr3:141517600-141519000	Enhancers	Fetal Thymus	thymus
10	chr3:141517800-141519000	Enhancers	Colon Smooth Muscle	Colon
11	chr3:141517800-141519400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:141517800-141521000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr3:141517800-141523400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:141517800-141523400	Weak transcription	Fetal Kidney	kidney
15	chr3:141517800-141523600	Weak transcription	Pancreas	Pancrea
16	chr3:141518000-141523400	Weak transcription	Esophagus	oesophagus
17	chr3:141518800-141519200	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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