Variant report

Variant	rs59954106
Chromosome Location	chr3:141512229-141512230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16851813	0.90[AMR][1000 genomes]
rs16851836	0.90[AMR][1000 genomes]
rs16851899	0.80[AMR][1000 genomes]
rs16851927	0.80[AMR][1000 genomes]
rs57823850	0.90[AMR][1000 genomes]
rs61352893	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141504200-141512800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:141510400-141515400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:141511800-141514400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:141511800-141514800	Enhancers	Thymus	Thymus
5	chr3:141511800-141515200	Enhancers	Fetal Thymus	thymus
6	chr3:141512200-141514000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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