Variant report

Variant	rs57835387
Chromosome Location	chr22:33033587-33033588
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16985304	0.89[EUR][1000 genomes]
rs16990851	0.84[EUR][1000 genomes]
rs16990852	0.84[EUR][1000 genomes]
rs3788466	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56678072	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57696440	0.84[EUR][1000 genomes]
rs57751077	1.00[ASN][1000 genomes]
rs59218864	0.92[EUR][1000 genomes]
rs59354128	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59683873	0.89[EUR][1000 genomes]
rs59972896	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7511209	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8136931	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8137653	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621514	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1061824	chr22:33013014-33101138	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv459875	chr22:33025180-33097662	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv588896	chr22:33025180-33097662	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33029000-33039200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr22:33029200-33036000	Weak transcription	Fetal Stomach	stomach
3	chr22:33031000-33040000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr22:33032400-33033600	Enhancers	Fetal Thymus	thymus
5	chr22:33032600-33033600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr22:33033000-33033600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr22:33033000-33033600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr22:33033000-33033600	Enhancers	HMEC	breast
9	chr22:33033200-33033600	Enhancers	Brain Angular Gyrus	brain
10	chr22:33033400-33033600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr22:33033400-33034000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr22:33033400-33034000	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
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