Variant report

Variant	rs59683873
Chromosome Location	chr22:33027776-33027777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33015941..33022634-chr22:33022783..33027992,6	MCF-7	breast:
2	22:32920308-32927723..22:33024278-33030812	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13340090	0.94[ASN][1000 genomes]
rs16985304	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16990851	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16990852	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3788466	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56678072	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57696440	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57835387	0.89[EUR][1000 genomes]
rs59218864	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59972896	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60022533	0.94[ASN][1000 genomes]
rs738994	0.94[ASN][1000 genomes]
rs7511209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8136931	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8137407	0.94[ASN][1000 genomes]
rs8137653	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs8139704	0.94[ASN][1000 genomes]
rs8139932	0.94[ASN][1000 genomes]
rs9619281	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1061824	chr22:33013014-33101138	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv459875	chr22:33025180-33097662	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv588896	chr22:33025180-33097662	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33020600-33030200	Weak transcription	Colon Smooth Muscle	Colon
2	chr22:33023600-33028800	Enhancers	Primary hematopoietic stem cells	blood
3	chr22:33025000-33028400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr22:33025000-33028800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr22:33025200-33030200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr22:33025200-33030200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr22:33025400-33033200	Weak transcription	Fetal Kidney	kidney
8	chr22:33025600-33027800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr22:33025600-33028000	Weak transcription	Lung	lung
10	chr22:33025600-33030200	Weak transcription	Right Atrium	heart
11	chr22:33025800-33027800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr22:33025800-33028000	Weak transcription	Adipose Nuclei	Adipose
13	chr22:33025800-33028000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr22:33025800-33028000	Weak transcription	Left Ventricle	heart
15	chr22:33025800-33028200	Weak transcription	Fetal Muscle Leg	muscle
16	chr22:33025800-33028200	Weak transcription	Spleen	Spleen
17	chr22:33026000-33029400	Enhancers	Fetal Thymus	thymus
18	chr22:33026400-33028000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr22:33027000-33028000	Weak transcription	Fetal Stomach	stomach
20	chr22:33027200-33028800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr22:33027400-33027800	Flanking Active TSS	GM12878-XiMat	blood
22	chr22:33027600-33028800	Enhancers	HepG2	liver
23	chr22:33027600-33029000	Enhancers	Placenta	Placenta
24	chr22:33027600-33031000	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links