Variant report

Variant	rs57859162
Chromosome Location	chr14:78315460-78315461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10139828	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10149767	0.88[ASN][1000 genomes]
rs10150446	0.88[ASN][1000 genomes]
rs10150706	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11848126	1.00[ASN][1000 genomes]
rs11848358	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106478	1.00[ASN][1000 genomes]
rs17106499	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106558	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1862125	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28489182	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28613643	1.00[ASN][1000 genomes]
rs55708480	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55898434	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55956517	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55967811	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55976930	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56051443	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61050485	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61053946	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7153025	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7160485	1.00[ASN][1000 genomes]
rs72688844	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8009704	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8018233	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8018945	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8022914	0.88[ASN][1000 genomes]
rs9323652	0.88[ASN][1000 genomes]
rs9323654	0.88[ASN][1000 genomes]
rs9972189	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78274800-78316600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:78293400-78331800	Weak transcription	Pancreas	Pancrea
3	chr14:78297600-78324000	Weak transcription	Ovary	ovary
4	chr14:78297600-78336600	Weak transcription	Left Ventricle	heart
5	chr14:78297800-78353600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr14:78299000-78325200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:78300000-78325400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr14:78301200-78325200	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:78301400-78325200	Weak transcription	Gastric	stomach
10	chr14:78301400-78325400	Weak transcription	Lung	lung
11	chr14:78301400-78342200	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:78302200-78323200	Weak transcription	Right Ventricle	heart
13	chr14:78302200-78331000	Weak transcription	Liver	Liver
14	chr14:78303000-78321200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:78306000-78326400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr14:78306000-78328800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr14:78306000-78331800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr14:78306000-78356400	Weak transcription	Thymus	Thymus
19	chr14:78306600-78330400	Weak transcription	Dnd41	blood
20	chr14:78310000-78325200	Weak transcription	Brain Substantia Nigra	brain
21	chr14:78310000-78339400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:78310400-78345000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:78311600-78325000	Weak transcription	Primary T cells from cord blood	blood
24	chr14:78311800-78316600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr14:78313400-78326000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr14:78314200-78348400	Weak transcription	Colon Smooth Muscle	Colon

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