Variant report

Variant	rs57861002
Chromosome Location	chr3:157163948-157163949
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35415718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58788969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6806952	1.00[ASN][1000 genomes]
rs73028049	1.00[ASN][1000 genomes]
rs7626481	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157158200-157164000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:157159000-157177400	Weak transcription	NH-A	brain
3	chr3:157160400-157195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:157160600-157176800	Weak transcription	Pancreas	Pancrea
5	chr3:157160800-157164600	Weak transcription	Fetal Stomach	stomach
6	chr3:157161000-157164800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr3:157161200-157164000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:157161200-157165800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:157161200-157186600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:157161600-157165800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr3:157161800-157164600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:157161800-157164600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr3:157161800-157164600	Enhancers	Fetal Lung	lung
14	chr3:157161800-157164800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr3:157162000-157164400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:157162000-157165800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:157162000-157165800	Enhancers	NHDF-Ad	bronchial
18	chr3:157162000-157171000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:157162200-157164200	Enhancers	NHEK	skin
20	chr3:157162400-157164000	Weak transcription	NHLF	lung
21	chr3:157162400-157177000	Weak transcription	HSMM	muscle
22	chr3:157162600-157164400	Weak transcription	Osteobl	bone
23	chr3:157163000-157164000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:157163000-157165000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:157163400-157164200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr3:157163400-157164600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:157163400-157165000	Enhancers	Hela-S3	cervix
28	chr3:157163400-157165200	Enhancers	Muscle Satellite Cultured Cells	--
29	chr3:157163600-157165600	Enhancers	HUVEC	blood vessel
30	chr3:157163800-157165400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr3:157163800-157177000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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