Variant report

Variant	rs73028049
Chromosome Location	chr3:157142897-157142898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2614	1.00[ASN][1000 genomes]
rs35415718	1.00[ASN][1000 genomes]
rs57861002	1.00[ASN][1000 genomes]
rs58788969	1.00[ASN][1000 genomes]
rs6806952	1.00[ASN][1000 genomes]
rs7626481	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157136200-157145800	Weak transcription	NHLF	lung
2	chr3:157136200-157146800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:157139000-157154600	Weak transcription	Lung	lung
4	chr3:157141400-157154200	Weak transcription	NH-A	brain
5	chr3:157141600-157143000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:157141600-157145400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:157141800-157143600	Weak transcription	Osteobl	bone
8	chr3:157141800-157146000	Weak transcription	NHDF-Ad	bronchial
9	chr3:157141800-157146200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:157141800-157146600	Weak transcription	HUVEC	blood vessel
11	chr3:157141800-157146800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:157141800-157147000	Weak transcription	HSMM	muscle
13	chr3:157142600-157144200	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr3:157142800-157143400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:157142800-157143800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:157142800-157145400	Weak transcription	Fetal Brain Female	brain
17	chr3:157142800-157145800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr3:157142800-157146400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:157142800-157154200	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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