Variant report

Variant	rs57864191
Chromosome Location	chr8:90899797-90899798
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90893552..90896595-chr8:90897347..90900085,4	MCF-7	breast:
2	chr8:90897922..90900728-chr8:90996397..90998045,2	MCF-7	breast:
3	chr8:90879570..90882252-chr8:90898908..90901899,2	MCF-7	breast:
4	chr8:90892774..90903972-chr8:90910662..90917000,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28764800	1.00[AMR][1000 genomes]
rs58573572	0.81[AFR][1000 genomes]
rs60563286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73306408	1.00[AMR][1000 genomes]
rs73308465	1.00[AMR][1000 genomes]
rs7827866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90890200-90904600	Weak transcription	Pancreas	Pancrea
2	chr8:90893000-90905200	Weak transcription	Primary B cells from cord blood	blood
3	chr8:90894000-90900400	Weak transcription	HSMMtube	muscle
4	chr8:90894000-90905800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:90894400-90913400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:90895200-90900400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:90895200-90913800	Weak transcription	Brain Angular Gyrus	brain
8	chr8:90895400-90899800	Weak transcription	NHEK	skin
9	chr8:90895400-90900400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:90895400-90904600	Weak transcription	Brain Substantia Nigra	brain
11	chr8:90895400-90904800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:90895600-90899800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:90895600-90899800	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:90895600-90899800	Weak transcription	Osteobl	bone
15	chr8:90895600-90900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:90895600-90913600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:90895800-90906000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:90897600-90900200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:90897600-90901800	Weak transcription	Stomach Mucosa	stomach
20	chr8:90897600-90903200	Enhancers	Hela-S3	cervix
21	chr8:90897600-90914000	Weak transcription	Gastric	stomach
22	chr8:90897800-90900000	Enhancers	Placenta	Placenta
23	chr8:90898200-90902600	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:90898200-90902600	Enhancers	NH-A	brain
25	chr8:90898400-90900800	Enhancers	Fetal Lung	lung
26	chr8:90898600-90900400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:90898600-90900400	Weak transcription	HepG2	liver
28	chr8:90898600-90902400	Enhancers	NHLF	lung
29	chr8:90898600-90902600	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr8:90898600-90902600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:90898600-90902800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr8:90898600-90903200	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr8:90898600-90907800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr8:90898800-90900800	Flanking Active TSS	A549	lung
35	chr8:90898800-90904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr8:90899000-90900000	Enhancers	Liver	Liver
37	chr8:90899000-90900600	Enhancers	Primary T cells from cord blood	blood
38	chr8:90899000-90900800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr8:90899000-90902400	Enhancers	Primary hematopoietic stem cells	blood
40	chr8:90899200-90900600	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr8:90899200-90900600	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr8:90899200-90900800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr8:90899200-90902400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:90899200-90902600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:90899200-90913800	Weak transcription	Thymus	Thymus
46	chr8:90899400-90899800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
47	chr8:90899400-90900000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr8:90899400-90900000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
49	chr8:90899400-90900400	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr8:90899400-90900600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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