Variant report

Variant	rs58573572
Chromosome Location	chr8:90924078-90924079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90917526..90919933-chr8:90923821..90925728,3	MCF-7	breast:
2	chr8:90921985..90924566-chr8:90930150..90932467,2	MCF-7	breast:
3	chr8:90922989..90925263-chr8:90933095..90935422,2	MCF-7	breast:
4	chr8:90923270..90927785-chr8:90927910..90932487,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10090863	0.95[EUR][1000 genomes]
rs10096580	1.00[EUR][1000 genomes]
rs10504885	1.00[EUR][1000 genomes]
rs13312969	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13312970	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901369	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16901430	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16901433	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805825	0.84[EUR][1000 genomes]
rs1805834	0.84[EUR][1000 genomes]
rs1805835	0.84[EUR][1000 genomes]
rs1805861	0.84[EUR][1000 genomes]
rs1805884	0.84[EUR][1000 genomes]
rs2280778	0.84[EUR][1000 genomes]
rs28371401	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28486026	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28764800	0.94[AFR][1000 genomes]
rs3736640	0.84[EUR][1000 genomes]
rs57864191	0.81[AFR][1000 genomes]
rs58321776	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58922279	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60259111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60563286	0.81[AFR][1000 genomes]
rs60938698	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66854331	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985934	0.84[EUR][1000 genomes]
rs6996173	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7005991	0.84[EUR][1000 genomes]
rs7006318	0.84[EUR][1000 genomes]
rs73304457	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73304468	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73304476	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73304479	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73304487	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7827866	0.81[AFR][1000 genomes]
rs9297757	0.95[EUR][1000 genomes]
rs9656966	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs989385	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90924600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:90915400-90924600	Weak transcription	Gastric	stomach
3	chr8:90915400-90924600	Weak transcription	Pancreas	Pancrea
4	chr8:90915400-90927200	Weak transcription	Spleen	Spleen
5	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:90915600-90924600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:90915600-90924600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:90915600-90924800	Weak transcription	Colonic Mucosa	Colon
9	chr8:90915600-90950800	Weak transcription	Stomach Mucosa	stomach
10	chr8:90915800-90924400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:90915800-90927400	Weak transcription	Right Ventricle	heart
12	chr8:90915800-90930800	Weak transcription	Fetal Brain Female	brain
13	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
14	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
15	chr8:90916200-90924400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr8:90916400-90926600	Weak transcription	HMEC	breast
17	chr8:90916400-90937000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
19	chr8:90916800-90924600	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:90917000-90924600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:90917000-90924600	Weak transcription	Esophagus	oesophagus
22	chr8:90917000-90928600	Weak transcription	Brain Anterior Caudate	brain
23	chr8:90917000-90937000	Weak transcription	Psoas Muscle	Psoas
24	chr8:90917200-90924400	Weak transcription	NHEK	skin
25	chr8:90917200-90924600	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:90917200-90924800	Weak transcription	HepG2	liver
27	chr8:90917200-90927400	Weak transcription	Aorta	Aorta
28	chr8:90917400-90924400	Weak transcription	Fetal Kidney	kidney
29	chr8:90917600-90953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr8:90918800-90951800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr8:90919200-90936800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr8:90920600-90924600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr8:90920600-90929200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:90920800-90924600	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:90921400-90924200	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr8:90921400-90924400	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr8:90921400-90929400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:90921400-90932000	Strong transcription	Hela-S3	cervix
40	chr8:90921600-90924400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr8:90921600-90924400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr8:90921800-90924400	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr8:90921800-90929400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr8:90921800-90941600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr8:90922000-90924400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:90922000-90932000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:90922000-90932000	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr8:90922000-90932800	Strong transcription	Primary B cells from peripheral blood	blood
49	chr8:90922200-90924600	Strong transcription	Fetal Intestine Large	intestine
50	chr8:90922200-90924800	Strong transcription	Liver	Liver

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