Variant report

Variant	rs10096580
Chromosome Location	chr8:90903424-90903425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90901320..90905720-chr8:90912535..90918739,8	K562	blood:
2	chr8:90901558..90909280-chr8:90911079..90918739,15	K562	blood:
3	chr8:90892774..90903972-chr8:90910662..90917000,28	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OSGIN2-1	chr8:90903120-90903696	NONHSAT127629

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10090863	0.95[EUR][1000 genomes]
rs10504885	1.00[EUR][1000 genomes]
rs13312969	1.00[EUR][1000 genomes]
rs13312970	1.00[EUR][1000 genomes]
rs16901369	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16901430	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16901433	1.00[EUR][1000 genomes]
rs1805825	0.84[EUR][1000 genomes]
rs1805834	0.84[EUR][1000 genomes]
rs1805835	0.84[EUR][1000 genomes]
rs1805861	0.84[EUR][1000 genomes]
rs1805884	0.84[EUR][1000 genomes]
rs2280778	0.84[EUR][1000 genomes]
rs28371401	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28486026	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3736640	0.84[EUR][1000 genomes]
rs58321776	1.00[EUR][1000 genomes]
rs58573572	1.00[EUR][1000 genomes]
rs58922279	1.00[EUR][1000 genomes]
rs60259111	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60938698	1.00[EUR][1000 genomes]
rs66854331	1.00[EUR][1000 genomes]
rs6985934	0.84[EUR][1000 genomes]
rs6996173	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7005991	0.84[EUR][1000 genomes]
rs7006318	0.84[EUR][1000 genomes]
rs73304457	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73304468	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73304476	1.00[EUR][1000 genomes]
rs73304479	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73304487	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9297757	0.95[EUR][1000 genomes]
rs9656966	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs989385	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90890200-90904600	Weak transcription	Pancreas	Pancrea
2	chr8:90893000-90905200	Weak transcription	Primary B cells from cord blood	blood
3	chr8:90894000-90905800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:90894400-90913400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:90895200-90913800	Weak transcription	Brain Angular Gyrus	brain
6	chr8:90895400-90904600	Weak transcription	Brain Substantia Nigra	brain
7	chr8:90895400-90904800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:90895600-90913600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:90895800-90906000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:90897600-90914000	Weak transcription	Gastric	stomach
11	chr8:90898600-90907800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:90898800-90904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:90899200-90913800	Weak transcription	Thymus	Thymus
14	chr8:90899400-90913800	Weak transcription	Small Intestine	intestine
15	chr8:90899600-90904800	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr8:90899600-90905200	Weak transcription	Dnd41	blood
17	chr8:90899800-90913600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:90900000-90904800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr8:90900000-90905000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:90900200-90904800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr8:90900400-90909000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:90900600-90905000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:90900600-90905200	Weak transcription	Primary T cells from cord blood	blood
24	chr8:90900600-90907800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr8:90900600-90908000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr8:90900600-90913400	Weak transcription	Liver	Liver
27	chr8:90900600-90913800	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:90900800-90904800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:90900800-90907800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr8:90900800-90908000	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr8:90900800-90913600	Weak transcription	Fetal Lung	lung
32	chr8:90900800-90913800	Weak transcription	Adipose Nuclei	Adipose
33	chr8:90900800-90913800	Weak transcription	Fetal Muscle Leg	muscle
34	chr8:90901000-90904600	Weak transcription	Aorta	Aorta
35	chr8:90902000-90903600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr8:90902000-90904600	Weak transcription	Brain Anterior Caudate	brain
37	chr8:90902200-90904600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr8:90902200-90905400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr8:90902200-90909200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:90902400-90904600	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr8:90902400-90904600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr8:90902400-90905000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:90902400-90905200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr8:90902400-90905200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:90902400-90907200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr8:90902400-90910600	Weak transcription	K562	blood
47	chr8:90902400-90911000	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr8:90902400-90913600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:90902400-90913800	Weak transcription	NHLF	lung
50	chr8:90902600-90903800	Weak transcription	NHDF-Ad	bronchial

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