Variant report

Variant	rs3736640
Chromosome Location	chr8:90955655-90955656
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90912800..90915496-chr8:90955655..90957583,2	MCF-7	breast:
2	chr8:90955116..90956985-chr8:90972344..90976396,3	K562	blood:
3	chr8:90954268..90956758-chr8:90968842..90971349,2	K562	blood:

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10090863	0.89[EUR][1000 genomes]
rs10096580	0.84[EUR][1000 genomes]
rs10504885	0.84[EUR][1000 genomes]
rs13312969	0.84[EUR][1000 genomes]
rs13312970	0.84[EUR][1000 genomes]
rs16901369	0.84[EUR][1000 genomes]
rs16901433	0.84[EUR][1000 genomes]
rs1805825	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805834	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805835	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805861	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs1805884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs2280778	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28371401	0.84[EUR][1000 genomes]
rs28486026	0.84[EUR][1000 genomes]
rs3026278	0.90[YRI][hapmap]
rs57266874	0.89[EUR][1000 genomes]
rs58321776	0.84[EUR][1000 genomes]
rs58573572	0.84[EUR][1000 genomes]
rs58922279	0.84[EUR][1000 genomes]
rs60259111	0.84[EUR][1000 genomes]
rs60938698	0.84[EUR][1000 genomes]
rs66854331	0.84[EUR][1000 genomes]
rs6985934	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6996173	0.84[EUR][1000 genomes]
rs7005991	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs7006318	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73304457	0.84[EUR][1000 genomes]
rs73304468	0.84[EUR][1000 genomes]
rs73304476	0.84[EUR][1000 genomes]
rs73304479	0.84[EUR][1000 genomes]
rs73304487	0.84[EUR][1000 genomes]
rs9297757	0.89[EUR][1000 genomes]
rs9656966	0.84[EUR][1000 genomes]
rs989385	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
3	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
4	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
5	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:90925400-90956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:90925400-90970200	Weak transcription	Pancreas	Pancrea
9	chr8:90925400-90979200	Weak transcription	Gastric	stomach
10	chr8:90925600-90961600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:90925600-90967200	Weak transcription	Colonic Mucosa	Colon
12	chr8:90925600-90975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:90927200-90964200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:90927800-90963800	Weak transcription	NHEK	skin
17	chr8:90927800-90969800	Weak transcription	Esophagus	oesophagus
18	chr8:90927800-90970200	Weak transcription	Spleen	Spleen
19	chr8:90927800-90970400	Weak transcription	Right Ventricle	heart
20	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:90928000-90965200	Weak transcription	Fetal Kidney	kidney
22	chr8:90928000-90970400	Weak transcription	Small Intestine	intestine
23	chr8:90929200-90961400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr8:90929400-90966000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr8:90931600-90965200	Weak transcription	HepG2	liver
26	chr8:90934000-90965400	Weak transcription	Fetal Brain Female	brain
27	chr8:90937200-90969800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:90937200-90970400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:90937200-90970400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr8:90937600-90961200	Weak transcription	Psoas Muscle	Psoas
31	chr8:90937600-90969400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr8:90937600-90970000	Weak transcription	Lung	lung
33	chr8:90938200-90974600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr8:90938400-90970000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:90938800-90963000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr8:90939000-90964800	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr8:90941400-90970000	Weak transcription	Brain Germinal Matrix	brain
38	chr8:90942600-90977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr8:90942800-90970000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr8:90944400-90956600	Strong transcription	HSMM	muscle
42	chr8:90944400-90977000	Strong transcription	Dnd41	blood
43	chr8:90944400-90982800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr8:90944600-90982000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:90945000-90956600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr8:90945200-90961000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr8:90945400-90958200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr8:90946200-90957600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr8:90947000-90960200	Weak transcription	Rectal Smooth Muscle	rectum

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