Variant report

Variant	rs989385
Chromosome Location	chr8:90897584-90897585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90896960..90899011-chr8:90900149..90902801,4	MCF-7	breast:
2	chr8:90893552..90896595-chr8:90897347..90900085,4	MCF-7	breast:
3	chr8:90876781..90880593-chr8:90896349..90898654,4	MCF-7	breast:
4	chr8:90892121..90894527-chr8:90895605..90898340,3	K562	blood:
5	chr8:90859490..90861951-chr8:90897017..90899382,2	MCF-7	breast:
6	chr8:90892774..90903972-chr8:90910662..90917000,28	MCF-7	breast:
7	chr8:90884877..90887679-chr8:90895518..90898177,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10090863	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10096580	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10504885	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12541412	1.00[CEU][hapmap]
rs13312969	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13312970	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16901369	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16901430	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16901433	1.00[CEU][hapmap];0.91[JPT][hapmap];1.00[EUR][1000 genomes]
rs16902897	1.00[CEU][hapmap]
rs1805825	0.84[EUR][1000 genomes]
rs1805834	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1805835	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1805861	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1805872	1.00[CEU][hapmap]
rs1805875	1.00[CEU][hapmap]
rs1805884	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1805905	1.00[CEU][hapmap]
rs2023554	1.00[CEU][hapmap]
rs2280778	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs28371401	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28486026	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3026296	1.00[CEU][hapmap]
rs3736640	0.84[EUR][1000 genomes]
rs58321776	1.00[EUR][1000 genomes]
rs58573572	1.00[EUR][1000 genomes]
rs58922279	1.00[EUR][1000 genomes]
rs60259111	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60938698	1.00[EUR][1000 genomes]
rs66854331	1.00[EUR][1000 genomes]
rs6983345	0.89[YRI][hapmap]
rs6985934	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs6996173	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7005991	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7006318	0.84[EUR][1000 genomes]
rs73304457	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73304468	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73304476	1.00[EUR][1000 genomes]
rs73304479	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73304487	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9297757	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9656966	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90890200-90904600	Weak transcription	Pancreas	Pancrea
2	chr8:90890800-90899000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:90893000-90905200	Weak transcription	Primary B cells from cord blood	blood
4	chr8:90894000-90900400	Weak transcription	HSMMtube	muscle
5	chr8:90894000-90905800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr8:90894400-90913400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:90895200-90899600	Weak transcription	Brain Anterior Caudate	brain
8	chr8:90895200-90899600	Weak transcription	HMEC	breast
9	chr8:90895200-90900400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:90895200-90913800	Weak transcription	Brain Angular Gyrus	brain
11	chr8:90895400-90898200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:90895400-90898600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:90895400-90899600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:90895400-90899800	Weak transcription	NHEK	skin
15	chr8:90895400-90900400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:90895400-90904600	Weak transcription	Brain Substantia Nigra	brain
17	chr8:90895400-90904800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:90895600-90897800	Enhancers	HUVEC	blood vessel
19	chr8:90895600-90898200	Weak transcription	NH-A	brain
20	chr8:90895600-90898600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:90895600-90899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:90895600-90899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr8:90895600-90899400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:90895600-90899800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr8:90895600-90899800	Weak transcription	Brain Hippocampus Middle	brain
26	chr8:90895600-90899800	Weak transcription	Osteobl	bone
27	chr8:90895600-90900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:90895600-90913600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr8:90895800-90899400	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr8:90895800-90906000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr8:90896000-90898600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr8:90896200-90897600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:90897200-90897600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:90897200-90897600	Enhancers	Gastric	stomach
35	chr8:90897200-90897600	Enhancers	Stomach Mucosa	stomach
36	chr8:90897200-90897600	Flanking Active TSS	A549	lung
37	chr8:90897200-90897600	Flanking Active TSS	Hela-S3	cervix
38	chr8:90897200-90898400	Enhancers	Liver	Liver
39	chr8:90897400-90897600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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