Variant report

Variant	rs2023554
Chromosome Location	chr8:91092812-91092813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10090863	1.00[CEU][hapmap]
rs10504885	1.00[CEU][hapmap]
rs10504889	0.80[ASN][1000 genomes]
rs10504890	0.80[ASN][1000 genomes]
rs12541412	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12541460	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12542162	0.80[ASN][1000 genomes]
rs12542331	0.80[ASN][1000 genomes]
rs12543449	0.80[ASN][1000 genomes]
rs12544878	0.80[ASN][1000 genomes]
rs12546756	0.80[ASN][1000 genomes]
rs12546761	0.80[ASN][1000 genomes]
rs12549228	0.83[ASN][1000 genomes]
rs12549284	0.80[ASN][1000 genomes]
rs12549654	0.88[ASN][1000 genomes]
rs12549888	0.80[ASN][1000 genomes]
rs13312969	1.00[CEU][hapmap]
rs13312970	1.00[CEU][hapmap]
rs1554925	0.80[ASN][1000 genomes]
rs1554926	0.80[ASN][1000 genomes]
rs1569318	0.80[ASN][1000 genomes]
rs1569319	0.80[ASN][1000 genomes]
rs16901369	1.00[CEU][hapmap]
rs16901430	1.00[CEU][hapmap]
rs16901433	1.00[CEU][hapmap]
rs16902897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903685	0.80[ASN][1000 genomes]
rs16903803	0.80[ASN][1000 genomes]
rs16903844	0.80[ASN][1000 genomes]
rs1805834	1.00[CEU][hapmap]
rs1805835	1.00[CEU][hapmap]
rs1805861	1.00[CEU][hapmap]
rs1805872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1805873	1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1805875	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1805884	1.00[CEU][hapmap]
rs1805905	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2142095	0.80[ASN][1000 genomes]
rs2178829	0.80[ASN][1000 genomes]
rs2280778	1.00[CEU][hapmap]
rs3026296	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61113365	0.80[ASN][1000 genomes]
rs61513100	0.83[ASN][1000 genomes]
rs6985934	1.00[CEU][hapmap]
rs7005991	1.00[CEU][hapmap]
rs73308356	0.80[ASN][1000 genomes]
rs9297757	1.00[CEU][hapmap]
rs9656966	1.00[CEU][hapmap]
rs989385	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91068000-91093200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:91073400-91093600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:91091200-91095400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:91091400-91094800	Active TSS	Brain Anterior Caudate	brain
6	chr8:91092400-91093000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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