Variant report

Variant	rs16901430
Chromosome Location	chr8:90899440-90899441
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90893552..90896595-chr8:90897347..90900085,4	MCF-7	breast:
2	chr8:90768490..90770691-chr8:90897745..90899697,2	MCF-7	breast:
3	chr8:90897922..90900728-chr8:90996397..90998045,2	MCF-7	breast:
4	chr8:90879570..90882252-chr8:90898908..90901899,2	MCF-7	breast:
5	chr8:90892774..90903972-chr8:90910662..90917000,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251136	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction
ENSG00000104312	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10090863	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs10096580	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10504885	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs12541412	1.00[CEU][hapmap]
rs13312969	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13312970	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16901369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16901433	1.00[CEU][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16902897	1.00[CEU][hapmap]
rs1805834	1.00[CEU][hapmap]
rs1805835	1.00[CEU][hapmap]
rs1805861	1.00[CEU][hapmap]
rs1805872	1.00[CEU][hapmap]
rs1805873	1.00[CEU][hapmap]
rs1805875	1.00[CEU][hapmap]
rs1805884	1.00[CEU][hapmap]
rs1805905	1.00[CEU][hapmap]
rs2023554	1.00[CEU][hapmap]
rs2280778	1.00[CEU][hapmap]
rs28371401	0.95[EUR][1000 genomes]
rs28486026	0.95[EUR][1000 genomes]
rs3026296	1.00[CEU][hapmap]
rs58321776	0.95[EUR][1000 genomes]
rs58573572	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58922279	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60259111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60938698	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66854331	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6985934	1.00[CEU][hapmap]
rs6996173	0.95[EUR][1000 genomes]
rs7005991	1.00[CEU][hapmap]
rs73304457	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73304468	0.95[EUR][1000 genomes]
rs73304476	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73304479	0.95[EUR][1000 genomes]
rs73304487	0.95[EUR][1000 genomes]
rs9297757	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs9656966	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs989385	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90890200-90904600	Weak transcription	Pancreas	Pancrea
2	chr8:90893000-90905200	Weak transcription	Primary B cells from cord blood	blood
3	chr8:90894000-90900400	Weak transcription	HSMMtube	muscle
4	chr8:90894000-90905800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:90894400-90913400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:90895200-90899600	Weak transcription	Brain Anterior Caudate	brain
7	chr8:90895200-90899600	Weak transcription	HMEC	breast
8	chr8:90895200-90900400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:90895200-90913800	Weak transcription	Brain Angular Gyrus	brain
10	chr8:90895400-90899600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:90895400-90899800	Weak transcription	NHEK	skin
12	chr8:90895400-90900400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:90895400-90904600	Weak transcription	Brain Substantia Nigra	brain
14	chr8:90895400-90904800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:90895600-90899800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:90895600-90899800	Weak transcription	Brain Hippocampus Middle	brain
17	chr8:90895600-90899800	Weak transcription	Osteobl	bone
18	chr8:90895600-90900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:90895600-90913600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr8:90895800-90906000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:90897600-90900200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:90897600-90901800	Weak transcription	Stomach Mucosa	stomach
23	chr8:90897600-90903200	Enhancers	Hela-S3	cervix
24	chr8:90897600-90914000	Weak transcription	Gastric	stomach
25	chr8:90897800-90900000	Enhancers	Placenta	Placenta
26	chr8:90898000-90899600	Weak transcription	NHDF-Ad	bronchial
27	chr8:90898200-90902600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:90898200-90902600	Enhancers	NH-A	brain
29	chr8:90898400-90900800	Enhancers	Fetal Lung	lung
30	chr8:90898600-90900400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:90898600-90900400	Weak transcription	HepG2	liver
32	chr8:90898600-90902400	Enhancers	NHLF	lung
33	chr8:90898600-90902600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr8:90898600-90902600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:90898600-90902800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:90898600-90903200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr8:90898600-90907800	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr8:90898800-90900800	Flanking Active TSS	A549	lung
39	chr8:90898800-90904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:90899000-90900000	Enhancers	Liver	Liver
41	chr8:90899000-90900600	Enhancers	Primary T cells from cord blood	blood
42	chr8:90899000-90900800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr8:90899000-90902400	Enhancers	Primary hematopoietic stem cells	blood
44	chr8:90899200-90900600	Enhancers	HUES6 Cell Line	embryonic stem cell
45	chr8:90899200-90900600	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr8:90899200-90900800	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr8:90899200-90902400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:90899200-90902600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr8:90899200-90913800	Weak transcription	Thymus	Thymus
50	chr8:90899400-90899600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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