Variant report

Variant	rs73304487
Chromosome Location	chr8:90921349-90921350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90920978..90923384-chr8:90924531..90926533,2	MCF-7	breast:
2	chr8:90841090..90842981-chr8:90920708..90922317,2	MCF-7	breast:
3	chr8:90920379..90924050-chr8:90924527..90930361,8	MCF-7	breast:
4	chr8:90919218..90921803-chr8:90993513..90996408,3	MCF-7	breast:
5	chr8:90886024..90888755-chr8:90920699..90922570,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10090863	0.95[EUR][1000 genomes]
rs10096580	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10504885	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13312969	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13312970	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16901369	1.00[EUR][1000 genomes]
rs16901430	0.95[EUR][1000 genomes]
rs16901433	1.00[EUR][1000 genomes]
rs1805825	0.84[EUR][1000 genomes]
rs1805834	0.84[EUR][1000 genomes]
rs1805835	0.84[EUR][1000 genomes]
rs1805861	0.84[EUR][1000 genomes]
rs1805884	0.84[EUR][1000 genomes]
rs2280778	0.84[EUR][1000 genomes]
rs28371401	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28486026	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736640	0.84[EUR][1000 genomes]
rs58321776	1.00[EUR][1000 genomes]
rs58573572	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58922279	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60259111	1.00[EUR][1000 genomes]
rs60938698	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66854331	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6985934	0.84[EUR][1000 genomes]
rs6996173	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005991	0.84[EUR][1000 genomes]
rs7006318	0.84[EUR][1000 genomes]
rs73304457	1.00[EUR][1000 genomes]
rs73304468	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73304476	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73304479	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9297757	0.95[EUR][1000 genomes]
rs9656966	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989385	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90923000	Weak transcription	Lung	lung
2	chr8:90915400-90923200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:90915400-90924600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:90915400-90924600	Weak transcription	Gastric	stomach
5	chr8:90915400-90924600	Weak transcription	Pancreas	Pancrea
6	chr8:90915400-90927200	Weak transcription	Spleen	Spleen
7	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:90915600-90922200	Weak transcription	Left Ventricle	heart
9	chr8:90915600-90922600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:90915600-90922600	Weak transcription	Placenta	Placenta
11	chr8:90915600-90922600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:90915600-90924600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:90915600-90924600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr8:90915600-90924800	Weak transcription	Colonic Mucosa	Colon
15	chr8:90915600-90950800	Weak transcription	Stomach Mucosa	stomach
16	chr8:90915800-90921800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:90915800-90922200	Weak transcription	Fetal Intestine Large	intestine
18	chr8:90915800-90922200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:90915800-90922600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr8:90915800-90922800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr8:90915800-90922800	Weak transcription	Fetal Thymus	thymus
22	chr8:90915800-90923000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:90915800-90923000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:90915800-90923000	Weak transcription	Fetal Stomach	stomach
25	chr8:90915800-90923000	Weak transcription	Thymus	Thymus
26	chr8:90915800-90923200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr8:90915800-90923200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr8:90915800-90924400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:90915800-90927400	Weak transcription	Right Ventricle	heart
30	chr8:90915800-90930800	Weak transcription	Fetal Brain Female	brain
31	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
32	chr8:90916000-90921400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
34	chr8:90916200-90924400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr8:90916400-90922000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr8:90916400-90922000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr8:90916400-90922200	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr8:90916400-90926600	Weak transcription	HMEC	breast
39	chr8:90916400-90937000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:90916600-90921800	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr8:90916600-90922200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:90916600-90922200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr8:90916600-90922800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
45	chr8:90916800-90921400	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr8:90916800-90922000	Weak transcription	NH-A	brain
47	chr8:90916800-90922200	Weak transcription	Primary B cells from cord blood	blood
48	chr8:90916800-90922200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr8:90916800-90922600	Weak transcription	Primary T cells from cord blood	blood
50	chr8:90916800-90922600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links