Variant report

Variant	rs60259111
Chromosome Location	chr8:90899367-90899368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90893552..90896595-chr8:90897347..90900085,4	MCF-7	breast:
2	chr8:90768490..90770691-chr8:90897745..90899697,2	MCF-7	breast:
3	chr8:90897922..90900728-chr8:90996397..90998045,2	MCF-7	breast:
4	chr8:90859490..90861951-chr8:90897017..90899382,2	MCF-7	breast:
5	chr8:90879570..90882252-chr8:90898908..90901899,2	MCF-7	breast:
6	chr8:90892774..90903972-chr8:90910662..90917000,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104312	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000251136	Chromatin interaction
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10090863	0.95[EUR][1000 genomes]
rs10096580	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10504885	1.00[EUR][1000 genomes]
rs13312969	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13312970	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16901369	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16901430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16901433	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805825	0.84[EUR][1000 genomes]
rs1805834	0.84[EUR][1000 genomes]
rs1805835	0.84[EUR][1000 genomes]
rs1805861	0.84[EUR][1000 genomes]
rs1805884	0.84[EUR][1000 genomes]
rs2280778	0.84[EUR][1000 genomes]
rs28371401	1.00[EUR][1000 genomes]
rs28486026	1.00[EUR][1000 genomes]
rs3736640	0.84[EUR][1000 genomes]
rs58321776	1.00[EUR][1000 genomes]
rs58573572	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58922279	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60938698	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66854331	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6985934	0.84[EUR][1000 genomes]
rs6996173	1.00[EUR][1000 genomes]
rs7005991	0.84[EUR][1000 genomes]
rs7006318	0.84[EUR][1000 genomes]
rs73304457	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73304468	1.00[EUR][1000 genomes]
rs73304476	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73304479	1.00[EUR][1000 genomes]
rs73304487	1.00[EUR][1000 genomes]
rs9297757	0.95[EUR][1000 genomes]
rs9656966	1.00[EUR][1000 genomes]
rs989385	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90890200-90904600	Weak transcription	Pancreas	Pancrea
2	chr8:90893000-90905200	Weak transcription	Primary B cells from cord blood	blood
3	chr8:90894000-90900400	Weak transcription	HSMMtube	muscle
4	chr8:90894000-90905800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:90894400-90913400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:90895200-90899600	Weak transcription	Brain Anterior Caudate	brain
7	chr8:90895200-90899600	Weak transcription	HMEC	breast
8	chr8:90895200-90900400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:90895200-90913800	Weak transcription	Brain Angular Gyrus	brain
10	chr8:90895400-90899600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:90895400-90899800	Weak transcription	NHEK	skin
12	chr8:90895400-90900400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:90895400-90904600	Weak transcription	Brain Substantia Nigra	brain
14	chr8:90895400-90904800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:90895600-90899400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:90895600-90899400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr8:90895600-90899800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:90895600-90899800	Weak transcription	Brain Hippocampus Middle	brain
19	chr8:90895600-90899800	Weak transcription	Osteobl	bone
20	chr8:90895600-90900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr8:90895600-90913600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:90895800-90899400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:90895800-90906000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr8:90897600-90900200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:90897600-90901800	Weak transcription	Stomach Mucosa	stomach
26	chr8:90897600-90903200	Enhancers	Hela-S3	cervix
27	chr8:90897600-90914000	Weak transcription	Gastric	stomach
28	chr8:90897800-90900000	Enhancers	Placenta	Placenta
29	chr8:90898000-90899600	Weak transcription	NHDF-Ad	bronchial
30	chr8:90898200-90902600	Enhancers	Muscle Satellite Cultured Cells	--
31	chr8:90898200-90902600	Enhancers	NH-A	brain
32	chr8:90898400-90899400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr8:90898400-90899400	Weak transcription	HUVEC	blood vessel
34	chr8:90898400-90900800	Enhancers	Fetal Lung	lung
35	chr8:90898600-90899400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:90898600-90900400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:90898600-90900400	Weak transcription	HepG2	liver
38	chr8:90898600-90902400	Enhancers	NHLF	lung
39	chr8:90898600-90902600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr8:90898600-90902600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:90898600-90902800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:90898600-90903200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr8:90898600-90907800	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr8:90898800-90900800	Flanking Active TSS	A549	lung
45	chr8:90898800-90904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr8:90899000-90899400	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr8:90899000-90900000	Enhancers	Liver	Liver
48	chr8:90899000-90900600	Enhancers	Primary T cells from cord blood	blood
49	chr8:90899000-90900800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr8:90899000-90902400	Enhancers	Primary hematopoietic stem cells	blood

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