Variant report

Variant	rs7006318
Chromosome Location	chr8:90978830-90978831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90972565..90976649-chr8:90976660..90979735,4	MCF-7	breast:
2	chr8:90963705..90966005-chr8:90977442..90979124,2	MCF-7	breast:
3	chr8:90964917..90966649-chr8:90978111..90980908,2	K562	blood:
4	chr8:90912194..90913716-chr8:90977300..90980133,2	MCF-7	breast:
5	chr8:90975523..90977214-chr8:90977319..90979000,2	K562	blood:

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10090863	0.89[EUR][1000 genomes]
rs10096580	0.84[EUR][1000 genomes]
rs10504885	0.84[EUR][1000 genomes]
rs13312969	0.84[EUR][1000 genomes]
rs13312970	0.84[EUR][1000 genomes]
rs16901369	0.84[EUR][1000 genomes]
rs16901433	0.84[EUR][1000 genomes]
rs1805825	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805834	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1805835	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805861	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805884	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2280778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28371401	0.84[EUR][1000 genomes]
rs28486026	0.84[EUR][1000 genomes]
rs3736640	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57266874	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58089858	0.85[ASN][1000 genomes]
rs58321776	0.84[EUR][1000 genomes]
rs58573572	0.84[EUR][1000 genomes]
rs58922279	0.84[EUR][1000 genomes]
rs60259111	0.84[EUR][1000 genomes]
rs60938698	0.84[EUR][1000 genomes]
rs66854331	0.84[EUR][1000 genomes]
rs6985934	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996173	0.84[EUR][1000 genomes]
rs7005991	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73304457	0.84[EUR][1000 genomes]
rs73304468	0.84[EUR][1000 genomes]
rs73304476	0.84[EUR][1000 genomes]
rs73304479	0.84[EUR][1000 genomes]
rs73304487	0.84[EUR][1000 genomes]
rs9297757	0.89[EUR][1000 genomes]
rs9656966	0.84[EUR][1000 genomes]
rs989385	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
2	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:90925400-90979200	Weak transcription	Gastric	stomach
4	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr8:90944400-90982800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:90944600-90982000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:90962000-90994400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:90962000-90995000	Weak transcription	Aorta	Aorta
12	chr8:90962400-90980200	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr8:90962400-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:90962600-90982400	Weak transcription	Stomach Mucosa	stomach
15	chr8:90962600-90983400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr8:90963000-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:90965000-90984200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:90969000-90981800	Strong transcription	Primary B cells from cord blood	blood
19	chr8:90969600-90983400	Strong transcription	HSMM	muscle
20	chr8:90970600-90988200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:90970800-90979200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:90970800-90983200	Weak transcription	Fetal Brain Female	brain
23	chr8:90970800-90988200	Weak transcription	Pancreas	Pancrea
24	chr8:90970800-90993200	Weak transcription	Psoas Muscle	Psoas
25	chr8:90971000-90994000	Weak transcription	Brain Substantia Nigra	brain
26	chr8:90971200-90994400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:90971400-90993800	Weak transcription	Small Intestine	intestine
28	chr8:90971800-90995600	Weak transcription	Right Ventricle	heart
29	chr8:90972200-90979200	Weak transcription	Fetal Stomach	stomach
30	chr8:90973600-90988400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:90973800-90993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr8:90974200-90986800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr8:90974200-90993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr8:90975600-90980000	Weak transcription	Brain Anterior Caudate	brain
35	chr8:90975600-90988400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr8:90975600-90993800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr8:90975600-90993800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:90975600-90994000	Weak transcription	Brain Angular Gyrus	brain
39	chr8:90975600-90995800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr8:90975800-90988400	Weak transcription	HMEC	breast
41	chr8:90975800-90993200	Weak transcription	NHDF-Ad	bronchial
42	chr8:90976000-90993800	Weak transcription	Fetal Heart	heart
43	chr8:90976200-90979200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr8:90976200-90979200	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:90976200-90984800	Weak transcription	HSMMtube	muscle
46	chr8:90976200-90993600	Weak transcription	Brain Hippocampus Middle	brain
47	chr8:90976200-90993800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:90976200-90993800	Weak transcription	Brain Germinal Matrix	brain
49	chr8:90976200-90995800	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr8:90976400-90979200	Weak transcription	Primary T cells from cord blood	blood

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