Variant report

Variant	rs1805905
Chromosome Location	chr8:91079921-91079922
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91074341..91077753-chr8:91078246..91080480,3	K562	blood:
2	chr8:91077672..91080611-chr8:91234474..91236679,2	K562	blood:
3	chr8:91079623..91081768-chr8:91235463..91237230,2	K562	blood:
4	chr8:91078574..91081154-chr8:91252454..91254106,2	K562	blood:

Variant related genes	Relation type
ENSG00000104327	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10090863	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs10504885	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs12541412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12541460	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs12549654	0.81[ASN][1000 genomes]
rs13312969	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs13312970	1.00[CEU][hapmap]
rs16901369	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs16901430	1.00[CEU][hapmap]
rs16901433	1.00[CEU][hapmap]
rs16902897	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805834	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1805835	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs1805861	1.00[CEU][hapmap]
rs1805872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805873	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805875	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1805884	1.00[CEU][hapmap]
rs2023554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2280778	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs3026296	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6985934	1.00[CEU][hapmap]
rs7005991	1.00[CEU][hapmap]
rs9297757	1.00[CEU][hapmap]
rs9656966	1.00[CEU][hapmap]
rs989385	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91058000-91085800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:91058200-91080200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:91059000-91084800	Weak transcription	Brain Anterior Caudate	brain
5	chr8:91066200-91083800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr8:91068000-91093200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:91073400-91093600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:91075000-91091000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:91075200-91085800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:91078000-91081000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:91078400-91090200	Weak transcription	HUES64 Cell Line	embryonic stem cell

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