Variant report

Variant	rs12541460
Chromosome Location	chr8:91101409-91101410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91092897..91095397-chr8:91099326..91102045,2	K562	blood:

Variant related genes	Relation type
ENSG00000104327	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10090863	1.00[CEU][hapmap]
rs10504885	1.00[CEU][hapmap]
rs10504889	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10504890	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12541412	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs12542162	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12542331	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12542532	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12543449	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12544878	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12546756	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12546761	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12548251	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12549228	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12549284	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12549654	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12549888	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12550495	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12550631	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13312969	1.00[CEU][hapmap]
rs13312970	1.00[CEU][hapmap]
rs1554925	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1554926	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1569318	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1569319	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16901433	1.00[CEU][hapmap]
rs16902897	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16903685	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16903803	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16903844	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16904010	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1805834	1.00[CEU][hapmap]
rs1805835	1.00[CEU][hapmap]
rs1805847	0.83[YRI][hapmap]
rs1805861	1.00[CEU][hapmap]
rs1805872	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1805873	0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.90[ASN][1000 genomes]
rs1805875	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap]
rs1805884	1.00[CEU][hapmap]
rs1805905	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.84[ASN][1000 genomes]
rs2023554	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2142095	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2178829	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280778	1.00[CEU][hapmap]
rs3026296	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs61113365	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61513100	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6985934	1.00[CEU][hapmap]
rs7005991	1.00[CEU][hapmap]
rs73308356	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9297757	1.00[CEU][hapmap]
rs9656966	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91100600-91102200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:91100600-91102400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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