Variant report

Variant	rs12544878
Chromosome Location	chr8:91141700-91141701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10504889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541412	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs12541460	0.90[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12542162	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542331	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542532	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12543449	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546756	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546761	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548251	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12549228	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12549284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12549654	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12549888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550495	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12550631	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1554925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1554926	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569318	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569319	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16902897	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs16903685	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903803	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904010	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1805872	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs1805873	0.85[JPT][hapmap]
rs1805875	0.85[JPT][hapmap]
rs1805905	0.85[JPT][hapmap]
rs2023554	0.92[JPT][hapmap];0.80[ASN][1000 genomes]
rs2142095	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178829	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3026296	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs61113365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61513100	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73308356	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91141600-91150400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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