Variant report

Variant	rs57868161
Chromosome Location	chr8:105907869-105907870
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57197436	0.96[AFR][1000 genomes]
rs58805155	0.96[AFR][1000 genomes]
rs73306974	0.96[AFR][1000 genomes]
rs73306980	0.96[AFR][1000 genomes]
rs73306981	1.00[AFR][1000 genomes]
rs73306983	1.00[AFR][1000 genomes]
rs73306988	0.96[AFR][1000 genomes]
rs73306999	0.96[AFR][1000 genomes]
rs73307002	0.90[AFR][1000 genomes]
rs73308807	0.90[AFR][1000 genomes]
rs73308810	1.00[AFR][1000 genomes]
rs73308829	1.00[AFR][1000 genomes]
rs73308851	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv2761456	chr8:105902833-105913971	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105904400-105908200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:105905000-105908200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:105906800-105908000	Weak transcription	Fetal Stomach	stomach
4	chr8:105907000-105908800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:105907000-105908800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:105907000-105909400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:105907200-105908000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:105907200-105908200	Enhancers	HMEC	breast
9	chr8:105907200-105908400	Enhancers	Stomach Smooth Muscle	stomach
10	chr8:105907200-105908800	Enhancers	Brain Hippocampus Middle	brain
11	chr8:105907200-105909200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:105907200-105909200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:105907200-105909400	Enhancers	Brain Substantia Nigra	brain
14	chr8:105907200-105909600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr8:105907200-105909600	Enhancers	Brain Angular Gyrus	brain
16	chr8:105907200-105909600	Enhancers	Brain Anterior Caudate	brain
17	chr8:105907400-105908200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:105907400-105908400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:105907400-105909000	Enhancers	Colon Smooth Muscle	Colon
20	chr8:105907400-105909400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr8:105907600-105908800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr8:105907600-105908800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:105907600-105909400	Enhancers	Brain Cingulate Gyrus	brain
24	chr8:105907800-105908200	Weak transcription	Gastric	stomach

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