Variant report

Variant	rs73306999
Chromosome Location	chr8:105898944-105898945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57197436	1.00[AFR][1000 genomes]
rs57868161	0.96[AFR][1000 genomes]
rs58805155	0.93[AFR][1000 genomes]
rs73306974	0.93[AFR][1000 genomes]
rs73306980	0.93[AFR][1000 genomes]
rs73306981	0.96[AFR][1000 genomes]
rs73306983	0.96[AFR][1000 genomes]
rs73306988	1.00[AFR][1000 genomes]
rs73307002	0.93[AFR][1000 genomes]
rs73308807	0.93[AFR][1000 genomes]
rs73308810	0.96[AFR][1000 genomes]
rs73308829	0.96[AFR][1000 genomes]
rs73308851	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105898000-105899200	Enhancers	NHDF-Ad	bronchial
2	chr8:105898000-105905000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:105898200-105899600	Enhancers	Fetal Brain Male	brain
4	chr8:105898200-105900000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr8:105898400-105899800	Enhancers	Brain Cingulate Gyrus	brain
6	chr8:105898600-105899200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:105898600-105899600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:105898600-105899600	Enhancers	Brain Substantia Nigra	brain
9	chr8:105898800-105899200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:105898800-105899200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:105898800-105899200	Enhancers	Brain Germinal Matrix	brain
12	chr8:105898800-105899200	Enhancers	Fetal Brain Female	brain
13	chr8:105898800-105899400	Enhancers	Brain Hippocampus Middle	brain
14	chr8:105898800-105899600	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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