Variant report

Variant	rs57874110
Chromosome Location	chr1:165755428-165755429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165736907..165739814-chr1:165752106..165756074,3	MCF-7	breast:
2	chr1:165754427..165757413-chr1:165869408..165871791,2	MCF-7	breast:
3	chr1:165738057..165739957-chr1:165754285..165756063,3	K562	blood:
4	chr1:165753594..165756222-chr1:165796180..165798248,2	MCF-7	breast:
5	chr1:165754802..165758244-chr1:165758762..165762159,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UCK2-4	chr1:165755354-165756162	NONHSAT007337

No data

No data

Variant related genes	Relation type
ENSG00000224358	Chromatin interaction
ENSG00000236364	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000143179	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16850696	1.00[AMR][1000 genomes]
rs16850707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2348836	1.00[AMR][1000 genomes]
rs56946978	1.00[AMR][1000 genomes]
rs58560842	1.00[AMR][1000 genomes]
rs60095346	1.00[AMR][1000 genomes]
rs61125729	1.00[AMR][1000 genomes]
rs6658134	1.00[AMR][1000 genomes]
rs7528944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2756102	chr1:165652342-165877342	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1011720	chr1:165669589-165802516	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165743200-165756600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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