Variant report
| Variant | rs6658134 |
|---|---|
| Chromosome Location | chr1:165777893-165777894 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000224358 | Chromatin interaction |
| ENSG00000143179 | Chromatin interaction |
| ENSG00000143183 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10918255 | 0.87[YRI][hapmap] |
| rs12143472 | 0.87[YRI][hapmap] |
| rs16848958 | 1.00[EUR][1000 genomes] |
| rs16849238 | 1.00[EUR][1000 genomes] |
| rs16850696 | 0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16850707 | 1.00[AMR][1000 genomes] |
| rs2348731 | 1.00[EUR][1000 genomes] |
| rs2348836 | 0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4341347 | 0.85[YRI][hapmap] |
| rs56946978 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57874110 | 1.00[AMR][1000 genomes] |
| rs58560842 | 1.00[AMR][1000 genomes] |
| rs60095346 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61125729 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73014618 | 1.00[EUR][1000 genomes] |
| rs73014649 | 1.00[EUR][1000 genomes] |
| rs73027060 | 1.00[EUR][1000 genomes] |
| rs73028710 | 1.00[EUR][1000 genomes] |
| rs73029460 | 1.00[EUR][1000 genomes] |
| rs73029465 | 1.00[EUR][1000 genomes] |
| rs73029467 | 1.00[EUR][1000 genomes] |
| rs7528944 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9333396 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756102 | chr1:165652342-165877342 | Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
| 2 | nsv1011720 | chr1:165669589-165802516 | Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:165777200-165778400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
