Variant report

Variant	rs16848958
Chromosome Location	chr1:165625742-165625743
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165618685..165622875-chr1:165623936..165629160,4	K562	blood:
2	chr1:165625676..165628644-chr1:165796353..165798256,2	K562	blood:
3	chr1:165624974..165629115-chr1:165629566..165633277,5	K562	blood:
4	chr1:165620003..165621659-chr1:165625089..165626900,2	K562	blood:

Variant related genes	Relation type
ENSG00000143179	Chromatin interaction
ENSG00000206990	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000143198	Chromatin interaction

rs_ID	r²[population]
rs16849230	0.96[AFR][1000 genomes]
rs16849238	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2348731	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56946978	1.00[EUR][1000 genomes]
rs57266835	1.00[EUR][1000 genomes]
rs58365780	1.00[EUR][1000 genomes]
rs60095346	1.00[EUR][1000 genomes]
rs60308920	1.00[EUR][1000 genomes]
rs61125729	1.00[EUR][1000 genomes]
rs6658134	1.00[EUR][1000 genomes]
rs73014618	1.00[EUR][1000 genomes]
rs73014649	1.00[EUR][1000 genomes]
rs73027023	1.00[EUR][1000 genomes]
rs73027060	1.00[EUR][1000 genomes]
rs73028710	1.00[EUR][1000 genomes]
rs73029460	1.00[EUR][1000 genomes]
rs73029465	1.00[EUR][1000 genomes]
rs73029467	1.00[EUR][1000 genomes]
rs7528944	1.00[EUR][1000 genomes]
rs9333396	1.00[EUR][1000 genomes]

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165603800-165631200	Weak transcription	Fetal Kidney	kidney
2	chr1:165604400-165628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:165604800-165628400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr1:165604800-165632200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:165605200-165628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr1:165606200-165659600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:165610600-165630800	Weak transcription	Small Intestine	intestine
8	chr1:165615200-165628400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:165615400-165630000	Weak transcription	GM12878-XiMat	blood
10	chr1:165615600-165629600	Weak transcription	Primary B cells from cord blood	blood
11	chr1:165615600-165630200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr1:165615600-165631000	Weak transcription	NHEK	skin
13	chr1:165615800-165631000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr1:165616400-165630200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:165616400-165632000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:165617000-165630000	Weak transcription	Thymus	Thymus
17	chr1:165617000-165631200	Strong transcription	Fetal Stomach	stomach
18	chr1:165617400-165625800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:165617400-165627800	Strong transcription	Fetal Intestine Small	intestine
20	chr1:165617600-165627800	Strong transcription	Lung	lung
21	chr1:165618000-165626200	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr1:165618000-165627600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr1:165618000-165631000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:165618000-165638600	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:165618200-165652400	Strong transcription	Fetal Muscle Leg	muscle
26	chr1:165618400-165626400	Strong transcription	Fetal Lung	lung
27	chr1:165618400-165627200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr1:165618400-165627200	Strong transcription	Sigmoid Colon	Sigmoid Colon
29	chr1:165618600-165627200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr1:165618600-165627800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr1:165618600-165634800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr1:165618800-165630800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:165618800-165638600	Strong transcription	Fetal Intestine Large	intestine
34	chr1:165619000-165627000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:165619000-165627200	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:165619000-165627400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:165619000-165627600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr1:165619000-165627800	Strong transcription	Placenta	Placenta
39	chr1:165619000-165627800	Strong transcription	Rectal Mucosa Donor 31	rectum
40	chr1:165619000-165635000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr1:165619000-165642600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr1:165619000-165643600	Strong transcription	Fetal Muscle Trunk	muscle
43	chr1:165619200-165627400	Strong transcription	Brain Anterior Caudate	brain
44	chr1:165619200-165628000	Strong transcription	Osteobl	bone
45	chr1:165619200-165630800	Strong transcription	NHDF-Ad	bronchial
46	chr1:165619200-165634200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr1:165619200-165648800	Strong transcription	Liver	Liver
48	chr1:165619400-165627600	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:165619400-165627800	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr1:165619400-165628000	Strong transcription	Primary T helper cells fromperipheralblood	blood

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