Variant report

Variant	rs73027023
Chromosome Location	chr1:165562500-165562501
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165226625..165228087-chr1:165561750..165562805,5	K562	blood:
2	chr1:165372874..165373802-chr1:165561869..165562669,5	MCF-7	breast:
3	chr1:165361774..165362688-chr1:165561662..165562980,6	MCF-7	breast:
4	chr1:165377455..165378027-chr1:165561880..165562910,7	MCF-7	breast:
5	chr1:165083624..165084216-chr1:165561962..165562804,2	K562	blood:
6	chr1:165377580..165378293-chr1:165561493..165562676,4	MCF-7	breast:
7	chr1:165372897..165374942-chr1:165561137..165563189,2	MCF-7	breast:
8	chr1:165361798..165362919-chr1:165561812..165563315,19	K562	blood:
9	chr1:165372861..165373913-chr1:165561845..165562894,14	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16848958	1.00[EUR][1000 genomes]
rs16849238	1.00[EUR][1000 genomes]
rs2348731	1.00[EUR][1000 genomes]
rs56946978	1.00[EUR][1000 genomes]
rs57266835	1.00[EUR][1000 genomes]
rs58365780	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58659239	1.00[EUR][1000 genomes]
rs60308920	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61125729	1.00[EUR][1000 genomes]
rs73014618	1.00[EUR][1000 genomes]
rs73014649	1.00[EUR][1000 genomes]
rs73027030	0.97[AFR][1000 genomes]
rs73027060	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73028710	1.00[EUR][1000 genomes]
rs9333396	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165547400-165566800	Weak transcription	Psoas Muscle	Psoas
2	chr1:165561400-165562600	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:165561800-165562600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
4	chr1:165562000-165562600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
5	chr1:165562000-165562600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:165562000-165562600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:165562000-165562600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:165562000-165562600	Bivalent Enhancer	Fetal Muscle Leg	muscle
9	chr1:165562000-165562800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:165562200-165562800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:165562400-165562600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
12	chr1:165562400-165562800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr1:165562400-165562800	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr1:165562400-165562800	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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